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Snapshot: 2013-11-08
Current total primary research publications: 301


1. Hashizume M, Miyazaki T, Sakimura K, Watanabe M, Kitamura K, Kano M. Disruption of cerebellar microzonal organization in GluD2 (GluRδ2) knockout mouse. Front. Neural Circuits. 2013;7:130.

2. Kato HK, Gillet SN, Peters AJ, Isaacson JS, Komiyama T. Parvalbumin-expressing Interneurons Underlie a Local Inhibitory Circuit Regulating the Gain of Olfactory Bulb Output. Neuron. 2013. In press.

3. Dehez H, Piché M, De Koninck Y. Resolution and contrast enhancement in laser scanning microscopy using dark beam imaging. Opt. Express. 2013;21(13):15912–25.

4. Fajardo O, Zhu P, Friedrich RW. Control of a specific motor program by a small brain area in zebrafish. Front. Neural Circuits. 2013;7:67.

5. Hinz C, Namekawa R, Behrmann-Godel J, Oppelt C, Jaeschke A, Müller A, Friedrich RW, Gerlach G. Olfactory imprinting is triggered by MHC peptide ligands. Sci. Rep. 2013;3:2800.

6. Yang W, Carrasquillo Y, Hooks BM, Nerbonne JM, Burkhalter A. Distinct balance of excitation and inhibition in an interareal feedforward and feedback circuit of mouse visual cortex. J. Neurosci. 2013;33(44):17373–84.

7. Yasvoina M V, Genç B, Jara JH, Sheets PL, Quinlan KA, Milosevic A, Shepherd GMG, Heckman CJ, Özdinler PH. eGFP expression under UCHL1 promoter genetically labels corticospinal motor neurons and a subpopulation of degeneration-resistant spinal motor neurons in an ALS mouse model. J. Neurosci. 2013;33(18):7890–904.

8. Schie IW, Nolte L, Pedersen TL, Smith Z, Wu J, Yahiatène I, Newman JW, Huser T. Direct comparison of fatty acid ratios in single cellular lipid droplets as determined by comparative Raman spectroscopy and gas chromatography. Analyst. 2013;138(21):6662–70.

9. Liu F, Morrison AH, Gregor T. Dynamic interpretation of maternal inputs by the Drosophila segmentation gene network. Proc. Natl. Acad. Sci. U. S. A. 2013;110(17):6724–9.

10. Sun XR, Badura A, Pacheco DA, Lynch LA, Schneider ER, Taylor MP, Hogue IB, Enquist LW, Murthy M, Wang SS-H. Fast GCaMPs for improved tracking of neuronal activity. Nat. Commun. 2013;4:2170.

11. Garcia-Junco-Clemente P, Chow DK, Tring E, Lazaro MT, Trachtenberg JT, Golshani P. Overexpression of calcium-activated potassium channels underlies cortical dysfunction in a model of PTEN-associated autism. Proc. Natl. Acad. Sci. U. S. A. 2013;110(45):18297–302.

12. Seelig JD, Jayaraman V. Feature detection and orientation tuning in the Drosophila central complex. Nature. 2013.

13. Kress GJ, Yamawaki N, Wokosin DL, Wickersham IR, Shepherd GMG, Surmeier DJ. Convergent cortical innervation of striatal projection neurons. Nat. Neurosci. 2013;16(6):665–7.

14. Wardill TJ, Chen T-W, Schreiter ER, Hasseman JP, Tsegaye G, Fosque BF, Behnam R, Shields BC, Ramirez M, Kimmel BE, Kerr RA, Jayaraman V, Looger LL, Svoboda K, Kim DS. A neuron-based screening platform for optimizing genetically-encoded calcium indicators. PLoS One. 2013;8(10):e77728.

15. Zhu P, Frank T, Friedrich RW. Equalization of odor representations by a network of electrically coupled inhibitory interneurons. Nat. Neurosci. 2013;16(11):1678–86.

16. O’Connor DH, Hires SA, Guo Z V, Li N, Yu J, Sun Q-Q, Huber D, Svoboda K. Neural coding during active somatosensation revealed using illusory touch. Nat. Neurosci. 2013;16(7):958–65.

17. Andermann ML, Gilfoy NB, Goldey GJ, Sachdev RNS, Wölfel M, McCormick DA, Reid RC, Levene MJ. Chronic Cellular Imaging of Entire Cortical Columns in Awake Mice Using Microprisms. Neuron. 2013.

18. Nahir B, Jahr CE. Activation of Extrasynaptic NMDARs at Individual Parallel Fiber-Molecular Layer Interneuron Synapses in Cerebellum. J. Neurosci. 2013;33(41):16323–33.

19. Smith SL, Smith IT, Branco T, Häusser M. Dendritic spikes enhance stimulus selectivity in cortical neurons in vivo. Nature. 2013.

20. Scott BB, Brody CD, Tank DW. Cellular resolution functional imaging in behaving rats using voluntary head restraint. Neuron. 2013;80(2):371–84.

21. Wilson NR, Schummers J, Runyan CA, Yan SX, Chen RE, Deng Y, Sur M. Two-way communication with neural networks in vivo using focused light. Nat. Protoc. 2013;8(6):1184–203.

22. Holcomb PS, Hoffpauir BK, Hoyson MC, Jackson DR, Deerinck TJ, Marrs GS, Dehoff M, Wu J, Ellisman MH, Spirou GA. Synaptic Inputs Compete during Rapid Formation of the Calyx of Held: A New Model System for Neural Development. J. Neurosci. 2013;33(32):12954–12969.

23. Maisak MS, Haag J, Ammer G, Serbe E, Meier M, Leonhardt A, Schilling T, Bahl A, Rubin GM, Nern A, Dickson BJ, Reiff DF, Hopp E, Borst A. A directional tuning map of Drosophila elementary motion detectors. Nature. 2013;500(7461):212–216.

24. Polack P-O, Friedman J, Golshani P. Cellular mechanisms of brain state-dependent gain modulation in visual cortex. Nat. Neurosci. 2013;16(9):1331–9.

25. Kuhlman SJ, Olivas ND, Tring E, Ikrar T, Xu X, Trachtenberg JT. A disinhibitory microcircuit initiates critical-period plasticity in the visual cortex. Nature. 2013.

26. Granstedt AE, Bosse JB, Thiberge SY, Enquist LW. In vivo imaging of alphaherpesvirus infection reveals synchronized activity dependent on axonal sorting of viral proteins. Proc. Natl. Acad. Sci. U. S. A. 2013.

27. Lien AD, Scanziani M. Tuned thalamic excitation is amplified by visual cortical circuits. Nat. Neurosci. 2013.

28. Li Y, Ibrahim LA, Liu B, Zhang LI, Tao HW. Linear transformation of thalamocortical input by intracortical excitation. Nat. Neurosci. 2013.

29. Borghuis BG, Marvin JS, Looger LL, Demb JB. Two-Photon Imaging of Nonlinear Glutamate Release Dynamics at Bipolar Cell Synapses in the Mouse Retina. J. Neurosci. 2013;33(27):10972–10985.

30. Esposti F, Johnston J, Rosa JM, Leung K-M, Lagnado L. Olfactory Stimulation Selectively Modulates the OFF Pathway in the Retina of Zebrafish. Neuron. 2013;79(1):97–110.

31. Gonçalves JT, Anstey JE, Golshani P, Portera-Cailliau C. Circuit level defects in the developing neocortex of Fragile X mice. Nat. Neurosci. 2013;16(7):903–9.

32. Chen T-W, Wardill TJ, Sun Y, Pulver SR, Renninger SL, Baohan A, Schreiter ER, Kerr RA, Orger MB, Jayaraman V, Looger LL, Svoboda K, Kim DS. Ultrasensitive fluorescent proteins for imaging neuronal activity. Nature. 2013;499(7458):295–300.

33. Maco B, Holtmaat A, Cantoni M, Kreshuk A, Straehle CN, Hamprecht FA, Knott GW. Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons. PLoS One. 2013;8(2):e57405.

34. Schubert V, Lebrecht D, Holtmaat A. Peripheral Deafferentation-Driven Functional Somatosensory Map Shifts Are Associated with Local, Not Large-Scale Dendritic Structural Plasticity. J. Neurosci. 2013;33(22):9474–9487.

35. Thériault G, De Koninck Y, McCarthy N. Extended depth of field microscopy for rapid volumetric two-photon imaging. Opt. Express. 2013;21(8):10095–104.

36. Acker CD, Loew LM. Characterization of voltage-sensitive dyes in living cells using two-photon excitation. Methods Mol. Biol. 2013;995:147–60.

37. Szatmari EM, Oliveira AF, Sumner EJ, Yasuda R. Centaurin- 1-Ras-Elk-1 Signaling at Mitochondria Mediates  -Amyloid-Induced Synaptic Dysfunction. J. Neurosci. 2013;33(12):5367–5374.

38. Bock R, Shin JH, Kaplan AR, Dobi A, Markey E, Kramer PF, Gremel CM, Christensen CH, Adrover MF, Alvarez VA. Strengthening the accumbal indirect pathway promotes resilience to compulsive cocaine use. Nat. Neurosci. 2013.

39. Rose T, Schoenenberger P, Jezek K, Oertner TG. Developmental Refinement of Vesicle Cycling at Schaffer Collateral Synapses. Neuron. 2013;77(6):1109–1121.

40. Wachowiak M, Economo MN, Diaz-Quesada M, Brunert D, Wesson DW, White JA, Rothermel M. Optical Dissection of Odor Information Processing In Vivo Using GCaMPs Expressed in Specified Cell Types of the Olfactory Bulb. J. Neurosci. 2013;33(12):5285–5300.

41. Hooks BM, Mao T, Gutnisky DA, Yamawaki N, Svoboda K, Shepherd GMG. Organization of cortical and thalamic input to pyramidal neurons in mouse motor cortex. J. Neurosci. 2013;33(2):748–60.

42. Hill TC, Zito K. LTP-induced long-term stabilization of individual nascent dendritic spines. J. Neurosci. 2013;33(2):678–86.

43. Oliveira AF, Yasuda R. An Improved Ras Sensor for Highly Sensitive and Quantitative FRET-FLIM Imaging. PLoS One. 2013;8(1):e52874.

44. Takasaki KT, Ding JB, Sabatini BL. Live-Cell Superresolution Imaging by Pulsed STED Two-Photon Excitation Microscopy. Biophys. J. 2013;104(4):770–7.

45. Robles E, Filosa A, Baier H. Precise Lamination of Retinal Axons Generates Multiple Parallel Input Pathways in the Tectum. J. Neurosci. 2013;33(11):5027–5039.

46. Oh WC, Hill TC, Zito K. Synapse-specific and size-dependent mechanisms of spine structural plasticity accompanying synaptic weakening. Proc. Natl. Acad. Sci. 2013;110(4):E305–12.

47. Schneider ER, Civillico EF, Wang SS-H. CALCIUM-BASED DENDRITIC EXCITABILITY AND ITS REGULATION IN THE DEEP CEREBELLAR NUCLEI. J. Neurophysiol. 2013.

48. Horton NG, Wang K, Kobat D, Clark CG, Wise FW, Schaffer CB, Xu C. In vivo three-photon microscopy of subcortical structures within an intact mouse brain. Nat. Photonics. 2013;7(3):205–209.

49. Mostany R, Anstey JE, Crump KL, Maco B, Knott G, Portera-Cailliau C. Altered Synaptic Dynamics during Normal Brain Aging. J. Neurosci. 2013;33(9):4094–4104.

50. Beier KT, Borghuis BG, El-Danaf RN, Huberman AD, Demb JB, Cepko CL. Transsynaptic tracing with vesicular stomatitis virus reveals novel retinal circuitry. J. Neurosci. 2013;33(1):35–51.

51. Marvin JS, Borghuis BG, Tian L, Cichon J, Harnett MT, Akerboom J, Gordus A, Renninger SL, Chen T-W, Bargmann CI, Orger MB, Schreiter ER, Demb JB, Gan W-B, Hires SA, Looger LL. An optimized fluorescent probe for visualizing glutamate neurotransmission. Nat. Methods. 2013;10(2):162–70.

52. Hamilton AM, Oh WC, Vega-Ramirez H, Stein IS, Hell JW, Patrick GN, Zito K. Activity-dependent growth of new dendritic spines is regulated by the proteasome. Neuron. 2012;74(6):1023–30.

53. Gambino F, Holtmaat A. Spike-timing-dependent potentiation of sensory surround in the somatosensory cortex is facilitated by deprivation-mediated disinhibition. Neuron. 2012;75(3):490–502.

54. Parra SG, Vesuna SS, Murray TA, Levene MJ. Multiphoton microscopy of cleared mouse brain expressing YFP. J. Vis. Exp. 2012;(67):e3848.

55. Murray TA, Levene MJ. Singlet gradient index lens for deep in vivo multiphoton microscopy. J. Biomed. Opt. 2012;17(2):021106.

56. Buchanan KA, Blackman A V, Moreau AW, Elgar D, Costa RP, Lalanne T, Tudor Jones AA, Oyrer J, Sjöström PJ. Target-specific expression of presynaptic NMDA receptors in neocortical microcircuits. Neuron. 2012;75(3):451–66.

57. Gelbart MA, He B, Martin AC, Thiberge SY, Wieschaus EF, Kaschube M. Volume conservation principle involved in cell lengthening and nucleus movement during tissue morphogenesis. Proc. Natl. Acad. Sci. 2012;109(47):19298–303.

58. Nauhaus I, Nielsen KJ, Disney AA, Callaway EM. Orthogonal micro-organization of orientation and spatial frequency in primate primary visual cortex. Nat. Neurosci. 2012;15(12):1683–90.

59. Farrar MJ, Bernstein IM, Schlafer DH, Cleland TA, Fetcho JR, Schaffer CB. Chronic in vivo imaging in the mouse spinal cord using an implanted chamber. Nat. Methods. 2012;9(3):297–302.

60. Marshel JH, Kaye AP, Nauhaus I, Callaway EM. Anterior-posterior direction opponency in the superficial mouse lateral geniculate nucleus. Neuron. 2012;76(4):713–20.

61. Kwan AC, Dan Y. Dissection of cortical microcircuits by single-neuron stimulation in vivo. Curr. Biol. 2012;22(16):1459–67.

62. Lim H, Danias J. Label-free morphometry of retinal nerve fiber bundles by second-harmonic-generation microscopy. Opt. Lett. 2012;37(12):2316–8.

63. Lim H, Danias J. Effect of axonal micro-tubules on the morphology of retinal nerve fibers studied by second-harmonic generation. J. Biomed. Opt. 2012;17(11):110502.

64. Adesnik H, Bruns W, Taniguchi H, Huang ZJ, Scanziani M. A neural circuit for spatial summation in visual cortex. Nature. 2012;490(7419):226–31.

65. Zhu P, Fajardo O, Shum J, Zhang Schärer Y-P, Friedrich RW. High-resolution optical control of spatiotemporal neuronal activity patterns in zebrafish using a digital micromirror device. Nat. Protoc. 2012;7(7):1410–25.

66. Cruz-Martín A, Crespo M, Portera-Cailliau C. Glutamate induces the elongation of early dendritic protrusions via mGluRs in wild type mice, but not in fragile X mice. PLoS One. 2012;7(2):e32446.

67. Schärer Y-PZ, Shum J, Moressis A, Friedrich RW. Dopaminergic modulation of synaptic transmission and neuronal activity patterns in the zebrafish homolog of olfactory cortex. Front. Neural Circuits. 2012;6:76.

68. Marra V, Burden JJ, Thorpe JR, Smith IT, Smith SL, Häusser M, Branco T, Staras K. A preferentially segregated recycling vesicle pool of limited size supports neurotransmission in native central synapses. Neuron. 2012;76(3):579–89.

69. Bundschuh ST, Zhu P, Schärer Y-PZ, Friedrich RW. Dopaminergic modulation of mitral cells and odor responses in the zebrafish olfactory bulb. J. Neurosci. 2012;32(20):6830–40.

70. Wyatt RM, Tring E, Trachtenberg JT. Pattern and not magnitude of neural activity determines dendritic spine stability in awake mice. Nat. Neurosci. 2012;15(7):949–51.

71. Paukert M, Bergles DE. Reduction of motion artifacts during in vivo two-photon imaging of brain through heartbeat triggered scanning. J. Physiol. 2012;590(Pt 13):2955–63.

72. Gdalyahu A, Tring E, Polack P-O, Gruver R, Golshani P, Fanselow MS, Silva AJ, Trachtenberg JT. Associative fear learning enhances sparse network coding in primary sensory cortex. Neuron. 2012;75(1):121–32.

73. Tritsch NX, Ding JB, Sabatini BL. Dopaminergic neurons inhibit striatal output through non-canonical release of GABA. Nature. 2012;490(7419):262–6.

74. Drocco JA, Wieschaus EF, Tank DW. The synthesis-diffusion-degradation model explains Bicoid gradient formation in unfertilized eggs. Phys. Biol. 2012;9(5):055004.

75. Harvey CD, Coen P, Tank DW. Choice-specific sequences in parietal cortex during a virtual-navigation decision task. Nature. 2012;484(7392):62–8.

76. Ozden I, Dombeck DA, Hoogland TM, Tank DW, Wang SS-H. Widespread state-dependent shifts in cerebellar activity in locomoting mice. PLoS One. 2012;7(8):e42650.

77. Rivera DR, Brown CM, Ouzounov DG, Webb WW, Xu C. Use of a lensed fiber for a large-field-of-view, high-resolution, fiber-scanning microendoscope. Opt. Lett. 2012;37(5):881–3.

78. Rivera DR, Brown CM, Ouzounov DG, Webb WW, Xu C. Multifocal multiphoton endoscope. Opt. Lett. 2012;37(8):1349–51.

79. Brown CM, Rivera DR, Pavlova I, Ouzounov DG, Williams WO, Mohanan S, Webb WW, Xu C. In vivo imaging of unstained tissues using a compact and flexible multiphoton microendoscope. J. Biomed. Opt. 2012;17(4):040505.

80. Kato HK, Chu MW, Isaacson JS, Komiyama T. Dynamic sensory representations in the olfactory bulb: modulation by wakefulness and experience. Neuron. 2012;76(5):962–75.

81. Johnston DG, Denizet M, Mostany R, Portera-Cailliau C. Chronic In Vivo Imaging Shows No Evidence of Dendritic Plasticity or Functional Remapping in the Contralesional Cortex after Stroke. Cereb. Cortex. 2012.

82. Xu N, Harnett MT, Williams SR, Huber D, O’Connor DH, Svoboda K, Magee JC. Nonlinear dendritic integration of sensory and motor input during an active sensing task. Nature. 2012;492(7428):247–51.

83. Akerboom J, Chen T-W, Wardill TJ, Tian L, Marvin JS, Mutlu S, Calderón NC, Esposti F, Borghuis BG, Sun XR, Gordus A, Orger MB, Portugues R, Engert F, Macklin JJ, Filosa A, Aggarwal A, Kerr RA, Takagi R, Kracun S, Shigetomi E, Khakh BS, Baier H, Lagnado L, Wang SS-H, Bargmann CI, Kimmel BE, Jayaraman V, Svoboda K, Kim DS, Schreiter ER, Looger LL. Optimization of a GCaMP calcium indicator for neural activity imaging. J. Neurosci. 2012;32(40):13819–40.

84. Apicella AJ, Wickersham IR, Seung HS, Shepherd GMG. Laminarly orthogonal excitation of fast-spiking and low-threshold-spiking interneurons in mouse motor cortex. J. Neurosci. 2012;32(20):7021–33.

85. Kiritani T, Wickersham IR, Seung HS, Shepherd GMG. Hierarchical connectivity and connection-specific dynamics in the corticospinal-corticostriatal microcircuit in mouse motor cortex. J. Neurosci. 2012;32(14):4992–5001.

86. Suter BA, Migliore M, Shepherd GMG. Intrinsic Electrophysiology of Mouse Corticospinal Neurons: a Class-Specific Triad of Spike-Related Properties. Cereb. Cortex. 2012.

87. Packer AM, Peterka DS, Hirtz JJ, Prakash R, Deisseroth K, Yuste R. Two-photon optogenetics of dendritic spines and neural circuits. Nat. Methods. 2012;9(12):1202–5.

88. Petreanu L, Gutnisky DA, Huber D, Xu N, O’Connor DH, Tian L, Looger L, Svoboda K. Activity in motor-sensory projections reveals distributed coding in somatosensation. Nature. 2012;489(7415):299–303.

89. Seemann KM, Kiefersauer R, Jacob U, Kuhn B. Optical pH detection within a protein crystal. J. Phys. Chem. B. 2012;116(33):9873–81.

90. Kuhn B, Ozden I, Lampi Y, Hasan MT, Wang SS-H. An amplified promoter system for targeted expression of calcium indicator proteins in the cerebellar cortex. Front. Neural Circuits. 2012;6:49.

91. Wilson NR, Runyan CA, Wang FL, Sur M. Division and subtraction by distinct cortical inhibitory networks in vivo. Nature. 2012;488(7411):343–8.

92. Li Y, Lu H, Cheng P, Ge S, Xu H, Shi S-H, Dan Y. Clonally related visual cortical neurons show similar stimulus feature selectivity. Nature. 2012;486(7401):118–21.

93. Li Y-T, Ma W-P, Pan C-J, Zhang LI, Tao HW. Broadening of Cortical Inhibition Mediates Developmental Sharpening of Orientation Selectivity. J. Neurosci. 2012;32(12):3981–3991.

94. Ertürk A, Mauch CP, Hellal F, Förstner F, Keck T, Becker K, Jährling N, Steffens H, Richter M, Hübener M, Kramer E, Kirchhoff F, Dodt HU, Bradke F. Three-dimensional imaging of the unsectioned adult spinal cord to assess axon regeneration and glial responses after injury. Nat. Med. 2012;18(1):166–71.

95. Huber D, Gutnisky DA, Peron S, O’Connor DH, Wiegert JS, Tian L, Oertner TG, Looger LL, Svoboda K. Multiple dynamic representations in the motor cortex during sensorimotor learning. Nature. 2012;484(7395):473–478.

96. Zariwala HA, Borghuis BG, Hoogland TM, Madisen L, Tian L, De Zeeuw CI, Zeng H, Looger LL, Svoboda K, Chen T-W. A Cre-Dependent GCaMP3 Reporter Mouse for Neuronal Imaging In Vivo. J. Neurosci. 2012;32(9):3131–3141.

97. Jacob V, Petreanu L, Wright N, Svoboda K, Fox K. Regular spiking and intrinsic bursting pyramidal cells show orthogonal forms of experience-dependent plasticity in layer v of barrel cortex. Neuron. 2012;73(2):391–404.

98. Odermatt B, Nikolaev A, Lagnado L. Encoding of Luminance and Contrast by Linear and Nonlinear Synapses in the Retina. Neuron. 2012;73(4):758–773.

99. Arttamangkul S, Lau EK, Lu H-W, Williams JT. Desensitization and Trafficking of mu-opioid Receptors in Locus Coeruleus Neurons: Modulation by Kinases. Mol. Pharmacol. 2012;81(3):348–55.

100. Nauhaus I, Nielsen KJ, Callaway EM. Nonlinearity of two-photon Ca2+ imaging yields distorted measurements of tuning for V1 neuronal populations. J. Neurophysiol. 2012;107(3):923–36.

101. Scott BB, Gardner T, Ji N, Fee MS, Lois C. Wandering Neuronal Migration in the Postnatal Vertebrate Forebrain. J. Neurosci. 2012;32(4):1436–1446.

102. Viswanathan S, Bandyopadhyay S, Kao JPY, Kanold PO. Changing Microcircuits in the Subplate of the Developing Cortex. J. Neurosci. 2012;32(5):1589–1601.

103. Xiong Q, Oviedo H V., Trotman LC, Zador AM. PTEN Regulation of Local and Long-Range Connections in Mouse Auditory Cortex. J. Neurosci. 2012;32(5):1643–1652.

104. Atallah BV V., Bruns W, Carandini M, Scanziani M. Parvalbumin-Expressing Interneurons Linearly Transform Cortical Responses to Visual Stimuli. Neuron. 2012;73(1):159–170.

105. Gatesman Ammer A, Hayes KE, Martin KH, Zhang L, Spirou GA, Weed SA. Multi-photon imaging of tumor cell invasion in an orthotopic mouse model of oral squamous cell carcinoma. J. Vis. Exp. 2011;(53).

106. Farrar MJ, Wise FW, Fetcho JR, Schaffer CB. In vivo imaging of myelin in the vertebrate central nervous system using third harmonic generation microscopy. Biophys. J. 2011;100(5):1362–71.

107. Stierl M, Stumpf P, Udwari D, Gueta R, Hagedorn R, Losi A, Gärtner W, Petereit L, Efetova M, Schwarzel M, Oertner TG, Nagel G, Hegemann P. Light modulation of cellular cAMP by a small bacterial photoactivated adenylyl cyclase, bPAC, of the soil bacterium Beggiatoa. J. Biol. Chem. 2011;286(2):1181–8.

108. Truong T V, Supatto W, Koos DS, Choi JM, Fraser SE. Deep and fast live imaging with two-photon scanned light-sheet microscopy. Nat. Methods. 2011;8(9):757–60.

109. Chalifoux JR, Carter AG. GABAB receptor modulation of voltage-sensitive calcium channels in spines and dendrites. J. Neurosci. 2011;31(11):4221–32.

110. Quillinan N, Lau EK, Virk M, von Zastrow M, Williams JT. Recovery from mu-opioid receptor desensitization after chronic treatment with morphine and methadone. J. Neurosci. 2011;31(12):4434–43.

111. Sedlacek M, Tipton PW, Brenowitz SD. Sustained firing of cartwheel cells in the dorsal cochlear nucleus evokes endocannabinoid release and retrograde suppression of parallel fiber synapses. J. Neurosci. 2011;31(44):15807–17.

112. Lewis TL, Mao T, Arnold DB. A role for myosin VI in the localization of axonal proteins. PLoS Biol. 2011;9(3):e1001021.

113. Hamad MIK, Ma-Högemeier Z-L, Riedel C, Conrads C, Veitinger T, Habijan T, Schulz J-N, Krause M, Wirth MJ, Hollmann M, Wahle P. Cell class-specific regulation of neocortical dendrite and spine growth by AMPA receptor splice and editing variants. Development. 2011;138(19):4301–13.

114. Herzog E, Nadrigny F, Silm K, Biesemann C, Helling I, Bersot T, Steffens H, Schwartzmann R, Nagerl U V., El Mestikawy S, Rhee J, Kirchhoff F, Brose N. In Vivo Imaging of Intersynaptic Vesicle Exchange Using VGLUT1Venus Knock-In Mice. J. Neurosci. 2011;31(43):15544–15559.

115. Vesuna S, Torres R, Levene MJ. Multiphoton fluorescence, second harmonic generation, and fluorescence lifetime imaging of whole cleared mouse organs. J. Biomed. Opt. 2011;16(10):106009.

116. Herman MA, Nahir B, Jahr CE. Distribution of extracellular glutamate in the neuropil of hippocampus. PLoS One. 2011;6(11):e26501.

117. Bock DD, Lee W-CA, Kerlin AM, Andermann ML, Hood G, Wetzel AW, Yurgenson S, Soucy ER, Kim HS, Reid RC. Network anatomy and in vivo physiology of visual cortical neurons. Nature. 2011;471(7337):177–82.

118. Mellios N, Sugihara H, Castro J, Banerjee A, Le C, Kumar A, Crawford B, Strathmann J, Tropea D, Levine SS, Edbauer D, Sur M. miR-132, an experience-dependent microRNA, is essential for visual cortex plasticity. Nat. Neurosci. 2011;14(10):1240–2.

119. Mostaço-Guidolin LB, Ko AC-T, Popescu DP, Smith MSD, Kohlenberg EK, Shiomi M, Major A, Sowa MG. Evaluation of texture parameters for the quantitative description of multimodal nonlinear optical images from atherosclerotic rabbit arteries. Phys. Med. Biol. 2011;56(16):5319–34.

120. Dreosti E, Esposti F, Baden T, Lagnado L. In vivo evidence that retinal bipolar cells generate spikes modulated by light. Nat. Neurosci. 2011;14(8):951–2.

121. Baden T, Esposti F, Nikolaev A, Lagnado L. Spikes in Retinal Bipolar Cells Phase-Lock to Visual Stimuli with Millisecond Precision. Curr. Biol. 2011;21(22):1859–69.

122. Kuhlman SJ, Tring E, Trachtenberg JT. Fast-spiking interneurons have an initial orientation bias that is lost with vision. Nat. Neurosci. 2011;14(9):1121–3.

123. Chalifoux JR, Carter AG. Glutamate Spillover Promotes the Generation of NMDA Spikes. J. Neurosci. 2011;31(45):16435–16446.

124. Tuthill JC, Chiappe ME, Reiser MB. Neural correlates of illusory motion perception in Drosophila. Proc. Natl. Acad. Sci. 2011;108(23):9685–90.

125. Miri A, Daie K, Burdine RD, Aksay E, Tank DW. Regression-based identification of behavior-encoding neurons during large-scale optical imaging of neural activity at cellular resolution. J. Neurophysiol. 2011;105(2):964–80.

126. Miri A, Daie K, Arrenberg AB, Baier H, Aksay E, Tank DW. Spatial gradients and multidimensional dynamics in a neural integrator circuit. Nat. Neurosci. 2011;14(9):1150–9.

127. Christie JM, Chiu DN, Jahr CE. Ca(2+)-dependent enhancement of release by subthreshold somatic depolarization. Nat. Neurosci. 2011;14(1):62–8.

128. Acker CD, Yan P, Loew LM. Single-voxel recording of voltage transients in dendritic spines. Biophys. J. 2011;101(2):L11–3.

129. Berndt A, Schoenenberger P, Mattis J, Tye KM, Deisseroth K, Hegemann P, Oertner TG. High-efficiency channelrhodopsins for fast neuronal stimulation at low light levels. Proc. Natl. Acad. Sci. 2011;108(18):7595–600.

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131. Viaene AN, Petrof I, Sherman SM. Synaptic Properties of Thalamic Input to the Subgranular Layers of Primary Somatosensory and Auditory Cortices in the Mouse. J. Neurosci. 2011;31(36):12738–12747.

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272. Sjöström PJ, Häusser M. A cooperative switch determines the sign of synaptic plasticity in distal dendrites of neocortical pyramidal neurons. Neuron. 2006;51(2):227–38.

273. Holtmaat A, Wilbrecht L, Knott GW, Welker E, Svoboda K. Experience-dependent and cell-type-specific spine growth in the neocortex. Nature. 2006;441(7096):979–83.

274. Yasuda R, Harvey CD, Zhong H, Sobczyk A, Van Aelst L, Svoboda K. Supersensitive Ras activation in dendrites and spines revealed by two-photon fluorescence lifetime imaging. Nat. Neurosci. 2006;9(2):283–291.

275. Arttamangkul S, Torrecilla M, Kobayashi K, Okano H, Williams JT. Separation of $\mu$-Opioid Receptor Desensitization and Internalization: Endogenous Receptors in Primary Neuronal Cultures. J. Neurosci. 2006;26(15):4118.

276. Gray NW, Weimer RM, Bureau I, Svoboda K. Rapid redistribution of synaptic PSD-95 in the neocortex in vivo. PLoS Biol. 2006;4(11):e370.

277. Scheuss V, Yasuda R, Sobczyk A, Svoboda K. Nonlinear [Ca2+] signaling in dendrites and spines caused by activity-dependent depression of Ca2+ extrusion. J. Neurosci. 2006;26(31):8183.

278. Vigot R, Barbieri S, Bräuner-Osborne H, Turecek R, Shigemoto R, Zhang YP, Luján R, Jacobson LH, Biermann B, Fritschy JM, others. Differential compartmentalization and distinct functions of GABAB receptor variants. Neuron. 2006;50(4):589–601.

279. De Paola V, Holtmaat A, Knott G, Song S, Wilbrecht L, Caroni P, Svoboda K. Cell type-specific structural plasticity of axonal branches and boutons in the adult neocortex. Neuron. 2006;49(6):861–875.

280. Papageorgas P, Maroulis D, Anagnostopoulos G, Albrecht H, Wagner B, Iakovidis DK, Theofanous NG. A high-performance imaging and control system for a micromirror-based laser-scanning endoscope device. IEEE Trans. Instrum. Meas. 2006;55(5):1725 – 1733.

281. Gregor T, Bialek W, de Ruyter van Steveninck RR, Tank DW, Wieschaus EF. Diffusion and scaling during early embryonic pattern formation. Proc. Natl. Acad. Sci. 2005;102(51):18403–7.

282. Song S, Sjöström PJ, Reigl M, Nelson S, Chklovskii DB. Highly nonrandom features of synaptic connectivity in local cortical circuits. PLoS Biol. 2005;3(3):e68.

283. Sternson SM, Shepherd GMG, Friedman JM. Topographic mapping of VMH --> arcuate nucleus microcircuits and their reorganization by fasting. Nat. Neurosci. 2005;8(10):1356–63.

284. Shepherd GMG, Svoboda K. Laminar and columnar organization of ascending excitatory projections to layer 2/3 pyramidal neurons in rat barrel cortex. J. Neurosci. 2005;25(24):5670–9.

285. Shepherd GMG, Stepanyants A, Bureau I, Chklovskii D, Svoboda K. Geometric and functional organization of cortical circuits. Nat. Neurosci. 2005;8(6):782–90.

286. Ngo-Anh TJ, Bloodgood BL, Lin M, Sabatini BL, Maylie J, Adelman JP. SK channels and NMDA receptors form a Ca2+-mediated feedback loop in dendritic spines. Nat. Neurosci. 2005;8(5):642–9.

287. Holtmaat AJGD, Trachtenberg JT, Wilbrecht L, Shepherd GM, Zhang X, Knott GW, Svoboda K. Transient and persistent dendritic spines in the neocortex in vivo. Neuron. 2005;45(2):279–91.

288. Ohki K, Chung S, Ch’ng YH, Kara P, Reid RC. Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex. Nature. 2005;433(7026):597–603.

289. Sobczyk A, Scheuss V, Svoboda K. NMDA receptor subunit-dependent [Ca2+] signaling in individual hippocampal dendritic spines. J. Neurosci. 2005;25(26):6037.

290. Portera-Cailliau C, Weimer RM, De Paola V, Caroni P, Svoboda K. Diverse modes of axon elaboration in the developing neocortex. PLoS Biol. 2005;3(8):e272.

291. Egger V, Svoboda K, Mainen ZF. Dendrodendritic synaptic signals in olfactory bulb granule cells: local spine boost and global low-threshold spike. J. Neurosci. 2005;25(14):3521.

292. Carter AG, Sabatini BL. State-dependent calcium signaling in dendritic spines of striatal medium spiny neurons. Neuron. 2004;44(3):483–93.

293. Bureau I, Shepherd GMG, Svoboda K. Precise development of functional and anatomical columns in the neocortex. Neuron. 2004;42(5):789–801.

294. Zito K, Knott G, Shepherd GMG, Shenolikar S, Svoboda K. Induction of spine growth and synapse formation by regulation of the spine actin cytoskeleton. Neuron. 2004;44(2):321–34.

295. Nimchinsky EA, Yasuda R, Oertner TG, Svoboda K. The number of glutamate receptors opened by synaptic stimulation in single hippocampal spines. J. Neurosci. 2004;24(8):2054.

296. Wang Y, Guo HF, Pologruto TA, Hannan F, Hakker I, Svoboda K, Zhong Y. Stereotyped odor-evoked activity in the mushroom body of Drosophila revealed by green fluorescent protein-based Ca2+ imaging. J. Neurosci. 2004;24(29):6507.

297. Pologruto TA, Yasuda R, Svoboda K. Monitoring neural activity and [Ca2+] with genetically encoded Ca2+ indicators. J. Neurosci. 2004;24(43):9572.

298. Brünig I, Kaech S, Brinkhaus H, Oertner TG, Matus A. Influx of extracellular calcium regulates actin-dependent morphological plasticity in dendritic spines. Neuropharmacology. 2004;47(5):669–676.

299. Shepherd GMG, Pologruto TA, Svoboda K. Circuit analysis of experience-dependent plasticity in the developing rat barrel cortex. Neuron. 2003;38(2):277–89.

300. Egger V, Svoboda K, Mainen ZF. Mechanisms of Lateral Inhibition in the Olfactory Bulb: Efficiency and Modulation of Spike-Evoked Calcium Influx into Granule Cells. J. Neurosci. 2003;23(20):7551–7558.

301. Trachtenberg JT, Chen BE, Knott GW, Feng G, Sanes JR, Welker E, Svoboda K. Long-term in vivo imaging of experience-dependent synaptic plasticity in adult cortex. Nature. 2002;420(6917):788–94.