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Mendeley!

We are maintaining the live 'official' list of ScanImage & Ephus citing/using papers on Mendeley. Periodically we reproduce a snapshot of that list below. You may join Mendeley and then follow the ScanImage & Ephus group to be able to search the papers in the group, using either the web client or the desktop client.

Be Counted!

If you don't see on the list below a paper you've written, or know of, that uses ScanImage and/or Ephus, please contact us! Note you can search the text below using your web browser's Find feature, e.g. Ctrl+F.

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Snapshot: 2012-02-20
Current total primary publications: 202

1. Li Y-T, Ma W-P, Pan C-J, Zhang LI, Tao HW: Broadening of cortical inhibition mediates developmental sharpening of orientation selectivity. Journal of Neuroscience 2012 (in press).

2. Odermatt B, Nikolaev A, Lagnado L: Encoding of luminance and contrast by linear and non-linear synapses in the retina. Neuron 2012 (in press).

3. Arttamangkul S, Lau EK, Lu H-W, Williams JT: Desensitization and Trafficking of mu-opioid Receptors in Locus Coeruleus Neurons: Modulation by Kinases. Molecular pharmacology 2012, 81:348-55.

4. Atallah BVV, Bruns W, Carandini M, Scanziani M: Parvalbumin-Expressing Interneurons Linearly Transform Cortical Responses to Visual Stimuli. Neuron 2012, 73:159-170.

5. Scott BB, Gardner T, Ji N, Fee MS, Lois C: Wandering Neuronal Migration in the Postnatal Vertebrate Forebrain. Journal of Neuroscience 2012, 32:1436-1446.

6. Viswanathan S, Bandyopadhyay S, Kao JPY, Kanold PO: Changing Microcircuits in the Subplate of the Developing Cortex. Journal of Neuroscience 2012, 32:1589-1601.

7. Wu X, Fu Y, Knott G, Lu J, Di Cristo G, Huang ZJ: GABA Signaling Promotes Synapse Elimination and Axon Pruning in Developing Cortical Inhibitory Interneurons. Journal of Neuroscience 2012, 32:331-43.

8. Xiong Q, Oviedo HV, Trotman LC, Zador AM: PTEN Regulation of Local and Long-Range Connections in Mouse Auditory Cortex. Journal of Neuroscience 2012, 32:1643-1652.

9. Acker CD, Yan P, Loew LM: Single-voxel recording of voltage transients in dendritic spines. Biophysical journal 2011, 101:L11-3.

10. Andermann ML, Kerlin AM, Roumis DK, Glickfeld LL, Reid RC: Functional Specialization of Mouse Higher Visual Cortical Areas. Neuron 2011, 72:1025-1039.

11. Baden T, Esposti F, Nikolaev A, Lagnado L: Spikes in Retinal Bipolar Cells Phase-Lock to Visual Stimuli with Millisecond Precision. Current biology 2011, 21:1859-69.

12. Bégin S, Burgoyne B, Mercier V, Villeneuve A, Vallée R, Côté D: Coherent anti-Stokes Raman scattering hyperspectral tissue imaging with a wavelength-swept system. Biomedical optics express 2011, 2:1296-306.

13. Berndt A, Schoenenberger P, Mattis J, Tye KM, Deisseroth K, Hegemann P, Oertner TG: High-efficiency channelrhodopsins for fast neuronal stimulation at low light levels. Proceedings of the National Academy of Sciences of the United States of America 2011, 108:7595-600.

14. Blumhagen F, Zhu P, Shum J, Schärer Y-PZ, Yaksi E, Deisseroth K, Friedrich RW: Neuronal filtering of multiplexed odour representations. Nature 2011, 479:493-498.

15. Bock DD, Lee W-CA, Kerlin AM, Andermann ML, Hood G, Wetzel AW, Yurgenson S, Soucy ER, Kim HS, Reid RC: Network anatomy and in vivo physiology of visual cortical neurons. Nature 2011, 471:177-82.

16. Borghuis BG, Tian L, Xu Y, Nikonov SS, Vardi N, Zemelman BV, Looger LL: Imaging light responses of targeted neuron populations in the rodent retina. Journal of Neuroscience 2011, 31:2855-67.

17. Chalifoux JR, Carter AG: Glutamate Spillover Promotes the Generation of NMDA Spikes. Journal of Neuroscience 2011, 31:16435-16446.

18. Chalifoux JR, Carter AG: GABAB receptor modulation of voltage-sensitive calcium channels in spines and dendrites. The Journal of Neuroscience 2011, 31:4221-32.

19. Christie JM, Chiu DN, Jahr CE: Ca(2+)-dependent enhancement of release by subthreshold somatic depolarization. Nature neuroscience 2011, 14:62-8.

20. De Pasquale R, Sherman SM: Synaptic Properties of Corticocortical Connections between the Primary and Secondary Visual Cortical Areas in the Mouse. Journal of Neuroscience 2011, 31:16494-16506.

21. Dreosti E, Esposti F, Baden T, Lagnado L: In vivo evidence that retinal bipolar cells generate spikes modulated by light. Nature neuroscience 2011, 14:951-2.

22. Hamad MIK, Ma-Högemeier Z-L, Riedel C, Conrads C, Veitinger T, Habijan T, Schulz J-N, Krause M, Wirth MJ, Hollmann M, et al.: Cell class-specific regulation of neocortical dendrite and spine growth by AMPA receptor splice and editing variants. Development 2011, 138:4301-13.

23. Herman MA, Nahir B, Jahr CE: Distribution of extracellular glutamate in the neuropil of hippocampus. PloS one 2011, 6:e26501.

24. Herzog E, Nadrigny F, Silm K, Biesemann C, Helling I, Bersot T, Steffens H, Schwartzmann R, Nagerl UV, El Mestikawy S, et al.: In Vivo Imaging of Intersynaptic Vesicle Exchange Using VGLUT1Venus Knock-In Mice. Journal of Neuroscience 2011, 31:15544-15559.

25. Hooks BM, Hires SA, Zhang Y-X, Huber D, Petreanu L, Svoboda K, Shepherd GMG: Laminar analysis of excitatory local circuits in vibrissal motor and sensory cortical areas. PLoS biology 2011, 9:e1000572.

26. Ikrar T, Olivas ND, Shi Y, Xu X: Mapping inhibitory neuronal circuits by laser scanning photostimulation. Journal of visualized experiments?: JoVE 2011, [no volume].

27. Kitamura K, Hausser M: Dendritic Calcium Signaling Triggered by Spontaneous and Sensory-Evoked Climbing Fiber Input to Cerebellar Purkinje Cells In Vivo. Journal of Neuroscience 2011, 31:10847-10858.

28. Kuhlman SJ, Tring E, Trachtenberg JT: Fast-spiking interneurons have an initial orientation bias that is lost with vision. Nature neuroscience 2011, 14:1121-3.

29. Lam Y-W, Sherman SM: Functional organization of the thalamic input to the thalamic reticular nucleus. Journal of Neuroscience 2011, 31:6791-9.

30. Lewis TL, Mao T, Arnold DB: A role for myosin VI in the localization of axonal proteins. PLoS biology 2011, 9:e1001021.

31. Lien AD, Scanziani M: In vivo Labeling of Constellations of Functionally Identified Neurons for Targeted in vitro Recordings. Frontiers in neural circuits 2011, 5:16.

32. Liu CC, Gao SS, Yuan T, Steele C, Puria S, Oghalai JS: Biophysical mechanisms underlying outer hair cell loss associated with a shortened tectorial membrane. Journal of the Association for Research in Otolaryngology?: JARO 2011, 12:577-94.

33. Mao T, Kusefoglu D, Hooks BM, Huber D, Petreanu L, Svoboda K: Long-Range Neuronal Circuits Underlying the Interaction between Sensory and Motor Cortex. Neuron 2011, 72:111-123.

34. Marshel JH, Garrett ME, Nauhaus I, Callaway EM: Functional Specialization of Seven Mouse Visual Cortical Areas. Neuron 2011, 72:1040-1054.

35. Mellios N, Sugihara H, Castro J, Banerjee A, Le C, Kumar A, Crawford B, Strathmann J, Tropea D, Levine SS, et al.: miR-132, an experience-dependent microRNA, is essential for visual cortex plasticity. Nature neuroscience 2011, 14:1240-2.

36. Middleton JW, Kiritani T, Pedersen C, Turner JG, Shepherd GMG, Tzounopoulos T: Mice with behavioral evidence of tinnitus exhibit dorsal cochlear nucleus hyperactivity because of decreased GABAergic inhibition. Proceedings of the National Academy of Sciences 2011, 108:7601-6.

37. Miri A, Daie K, Arrenberg AB, Baier H, Aksay E, Tank DW: Spatial gradients and multidimensional dynamics in a neural integrator circuit. Nature Neuroscience 2011, 14:1150-9.

38. Miri A, Daie K, Burdine RD, Aksay E, Tank DW: Regression-based identification of behavior-encoding neurons during large-scale optical imaging of neural activity at cellular resolution. Journal of neurophysiology 2011, 105:964-80.

39. Mostaço-Guidolin LB, Ko AC-T, Popescu DP, Smith MSD, Kohlenberg EK, Shiomi M, Major A, Sowa MG: Evaluation of texture parameters for the quantitative description of multimodal nonlinear optical images from atherosclerotic rabbit arteries. Physics in medicine and biology 2011, 56:5319-34.

40. Mostany R, Portera-Cailliau C: Absence of large-scale dendritic plasticity of layer 5 pyramidal neurons in peri-infarct cortex. Journal of Neuroscience 2011, 31:1734-8.

41. Nauhaus I, Nielsen KJ, Callaway EM: Nonlinearity of two-photon Ca2+ imaging yields distorted measurements of tuning for V1 neuronal populations. Journal of neurophysiology 2011, 107:923-36.

42. Peñagarikano O, Abrahams BS, Herman EI, Winden KD, Gdalyahu A, Dong H, Sonnenblick LI, Gruver R, Almajano J, Bragin A, et al.: Absence of CNTNAP2 Leads to Epilepsy, Neuronal Migration Abnormalities, and Core Autism-Related Deficits. Cell 2011, 147:235-246.

43. Pugh JR, Jahr CE: NMDA Receptor Agonists Fail To Alter Release from Cerebellar Basket Cells. Journal of Neuroscience 2011, 31:16550-16555.

44. Pugh JR, Jahr CE: Axonal GABAA receptors increase cerebellar granule cell excitability and synaptic activity. Journal of Neuroscience 2011, 31:565-74.

45. Qiu S, Anderson CT, Levitt P, Shepherd GMG: Circuit-specific intracortical hyperconnectivity in mice with deletion of the autism-associated Met receptor tyrosine kinase. Journal of Neuroscience 2011, 31:5855-64.

46. Quillinan N, Lau EK, Virk M, von Zastrow M, Williams JT: Recovery from mu-opioid receptor desensitization after chronic treatment with morphine and methadone. Journal of Neuroscience 2011, 31:4434-43.

47. Ramsey AJ, Milenkovic M, Oliveira AF, Escobedo-Lozoya Y, Seshadri S, Salahpour A, Sawa A, Yasuda R, Caron MGMG: Impaired NMDA receptor transmission alters striatal synapses and DISC1 protein in an age-dependent manner. Proceedings of the National Academy of Sciences 2011, 108:5795.

48. Rosselet C, Fieschi M, Hugues S, Bureau I: Associative learning changes the organization of functional excitatory circuits targeting the supragranular layers of mouse barrel cortex. Frontiers in neural circuits 2011, 4:126.

49. Sedlacek M, Tipton PW, Brenowitz SD: Sustained firing of cartwheel cells in the dorsal cochlear nucleus evokes endocannabinoid release and retrograde suppression of parallel fiber synapses. Journal of Neuroscience 2011, 31:15807-17.

50. Sheets PL, Suter BA, Kiritani T, Chan CS, Surmeier DJ, Shepherd GMG: Corticospinal-specific HCN expression in mouse motor cortex: I(h)-dependent synaptic integration as a candidate microcircuit mechanism involved in motor control. Journal of neurophysiology 2011, 106:2216-31.

51. Truong TV, Supatto W, Koos DS, Choi JM, Fraser SE: Deep and fast live imaging with two-photon scanned light-sheet microscopy. Nature Methods 2011, 8:757-60.

52. Tuthill JC, Chiappe ME, Reiser MB: Neural correlates of illusory motion perception in Drosophila. Proceedings of the National Academy of Sciences of the United States of America 2011, 108:9685-90.

53. Vesuna S, Torres R, Levene MJ: Multiphoton fluorescence, second harmonic generation, and fluorescence lifetime imaging of whole cleared mouse organs. Journal of biomedical optics 2011, 16:106009.

54. Viaene AN, Petrof I, Sherman SM: Synaptic Properties of Thalamic Input to the Subgranular Layers of Primary Somatosensory and Auditory Cortices in the Mouse. Journal of Neuroscience 2011, 31:12738-12747.

55. Viaene AN, Petrof I, Sherman SM: Synaptic properties of thalamic input to layers 2/3 and 4 of primary somatosensory and auditory cortices. Journal of neurophysiology 2011, 105:279-92.

56. Viaene AN, Petrof I, Sherman SM: Properties of the thalamic projection from the posterior medial nucleus to primary and secondary somatosensory cortices in the mouse. Proceedings of the National Academy of Sciences 2011, 108:18156-61.

57. Woods GF, Oh WC, Boudewyn LC, Mikula SK, Zito K: Loss of PSD-95 Enrichment Is Not a Prerequisite for Spine Retraction. Journal of Neuroscience 2011, 31:12129-12138.

58. Andermann ML, Kerlin AM, Reid R: Chronic cellular imaging of mouse visual cortex during operant behavior and passive viewing. Frontiers in Cellular Neuroscience 2010, 4.

59. Anderson CT, Sheets PL, Kiritani T, Shepherd GMG: Sublayer-specific microcircuits of corticospinal and corticostriatal neurons in motor cortex. Nature neuroscience 2010, 13:739-44.

60. Chalifoux JR, Carter AG: GABAB receptors modulate NMDA receptor calcium signals in dendritic spines. Neuron 2010, 66:101-13.

61. Chiappe ME, Seelig JD, Reiser MB, Jayaraman V: Walking modulates speed sensitivity in Drosophila motion vision. Current biology 2010, 20:1470-5.

62. Ch'ng YH, Reid RC: Cellular imaging of visual cortex reveals the spatial and functional organization of spontaneous activity. Frontiers in integrative neuroscience 2010, 4.

63. Chowdhury TG, Jimenez JC, Bomar JM, Cruz-Martin A, Cantle JP, Portera-Cailliau C: Fate of cajal-retzius neurons in the postnatal mouse neocortex. Frontiers in neuroanatomy 2010, 4:10.

64. Christie LA, Russell TA, Xu J, Wood L, Shepherd GMG, Contractor A: AMPA receptor desensitization mutation results in severe developmental phenotypes and early postnatal lethality. Proceedings of the National Academy of Sciences 2010, 107:9412-7.

65. Cruz-Martín A, Crespo M, Portera-Cailliau C: Delayed stabilization of dendritic spines in fragile X mice. The Journal of Neuroscience 2010, 30:7793-803.

66. Dombeck DA, Harvey CD, Tian L, Looger LL, Tank DW: Functional imaging of hippocampal place cells at cellular resolution during virtual navigation. Nature neuroscience 2010, 13:1433-40.

67. Dorostkar MMM, Dreosti E, Odermatt B, Lagnado L: Computational processing of optical measurements of neuronal and synaptic activity in networks. Journal of neuroscience methods 2010, 188:141-50.

68. Guetg N, Abdel Aziz S, Holbro N, Turecek R, Rose T, Seddik R, Gassmann M, Moes S, Jenoe P, Oertner TG, et al.: NMDA receptor-dependent GABAB receptor internalization via CaMKII phosphorylation of serine 867 in GABAB1. Proceedings of the National Academy of Sciences of the United States of America 2010, 107:13924-9.

69. Heider B, Nathanson JL, Isacoff EY, Callaway EM, Siegel RM: Two-Photon Imaging of Calcium in Virally Transfected Striate Cortical Neurons of Behaving Monkey. PloS one 2010, 5:e13829.

70. Heneka MTM, Nadrigny F, Regen T, Martinez-Hernandez A, Dumitrescu-Ozimek L, Terwel D, Jardanhazi-Kurutz D, Walter J, Kirchhoff F, Hanisch U-K, et al.: Locus ceruleus controls Alzheimer's disease pathology by modulating microglial functions through norepinephrine. Proceedings of the National Academy of Sciences of the United States of America 2010, 107:6058-63.

71. Higley MJ, Sabatini BL: Competitive regulation of synaptic Ca2+ influx by D2 dopamine and A2A adenosine receptors. Nature neuroscience 2010, 13:958-66.

72. Holbro N, Grunditz A, Wiegert JS, Oertner TG: AMPA receptors gate spine Ca(2+) transients and spike-timing-dependent potentiation. Proceedings of the National Academy of Sciences 2010, 107:15975-80.

73. Kerlin AM, Andermann ML, Berezovskii VK, Reid RC: Broadly tuned response properties of diverse inhibitory neuron subtypes in mouse visual cortex. Neuron 2010, 67:858-71.

74. Ko ACT, Ridsdale A, Smith MSD, Mostaço-Guidolin LB, Hewko MD, Pegoraro AF, Kohlenberg EK, Schattka B, Shiomi M, Stolow A, et al.: Multimodal nonlinear optical imaging of atherosclerotic plaque development in myocardial infarction-prone rabbits. Journal of biomedical optics 2010, 15:020501.

75. Komiyama T, Sato TR, O'Connor DH, Zhang Y-X, Huber D, Hooks BM, Gabitto M, Svoboda K: Learning-related fine-scale specificity imaged in motor cortex circuits of behaving mice. Nature 2010, 464:1182-6.

76. Lam Y-W, Sherman SM: Functional organization of the somatosensory cortical layer 6 feedback to the thalamus. Cerebral cortex 2010, 20:13-24.

77. Ma W-P, Liu B-H, Li Y-T, Huang ZJ, Zhang LI, Tao HW: Visual representations by cortical somatostatin inhibitory neurons--selective but with weak and delayed responses. Journal of Neuroscience 2010, 30:14371-9.

78. Martin SM, O'Brien GS, Portera-Cailliau C, Sagasti A: Wallerian degeneration of zebrafish trigeminal axons in the skin is required for regeneration and developmental pruning. Development 2010, 137:3985-94.

79. Mostaço-Guidolin LB, Sowa MG, Ridsdale A, Pegoraro AF, Smith MSD, Hewko MD, Kohlenberg EK, Schattka B, Shiomi M, Stolow A, et al.: Differentiating atherosclerotic plaque burden in arterial tissues using femtosecond CARS-based multimodal nonlinear optical imaging. Biomedical optics express 2010, 1:59-73.

80. Mostany R, Chowdhury TG, Johnston DG, Portonovo SA, Carmichael ST, Portera-Cailliau C: Local hemodynamics dictate long-term dendritic plasticity in peri-infarct cortex. Journal of Neuroscience 2010, 30:14116-26.

81. Niessing J, Friedrich RW: Olfactory pattern classification by discrete neuronal network states. Nature 2010, 465:47-52.

82. O'Connor DH, Clack NG, Huber D, Komiyama T, Myers EW, Svoboda K: Vibrissa-based object localization in head-fixed mice. Journal of Neuroscience 2010, 30:1947-67.

83. O'Connor DH, Peron SP, Huber D, Svoboda K: Neural activity in barrel cortex underlying vibrissa-based object localization in mice. Neuron 2010, 67:1048-61.

84. Oviedo HV, Bureau I, Svoboda K, Zador AM: The functional asymmetry of auditory cortex is reflected in the organization of local cortical circuits. Nature neuroscience 2010, 13:1413-20.

85. Parra SG, Chia TH, Zinter JP, Levene MJ: Multiphoton microscopy of cleared mouse organs. Journal of biomedical optics 2010, 15:036017.

86. Patterson MA, Szatmari EM, Yasuda R: AMPA receptors are exocytosed in stimulated spines and adjacent dendrites in a Ras-ERK-dependent manner during long-term potentiation. Proceedings of the National Academy of Sciences of the United States of America 2010, 107:15951-6.

87. Sato TR, Svoboda K: The functional properties of barrel cortex neurons projecting to the primary motor cortex. Journal of Neuroscience 2010, 30:4256-60.

88. Seelig JD, Chiappe ME, Lott GK, Dutta A, Osborne JE, Reiser MB, Jayaraman V: Two-photon calcium imaging from head-fixed Drosophila during optomotor walking behavior. Nature methods 2010, 7:535-40.

89. Shi Y, Nenadic Z, Xu X: Novel use of matched filtering for synaptic event detection and extraction. PloS one 2010, 5:e15517.

90. Smith SL, Häusser M: Parallel processing of visual space by neighboring neurons in mouse visual cortex. Nature neuroscience 2010, 13:1144-9.

91. Theyel BB, Llano DA, Sherman SM: The corticothalamocortical circuit drives higher-order cortex in the mouse. Nature neuroscience 2010, 13:84-8.

92. Wiechert MT, Judkewitz B, Riecke H, Friedrich RW: Mechanisms of pattern decorrelation by recurrent neuronal circuits. Nature neuroscience 2010, 13:1003-10.

93. Wilbrecht L, Holtmaat A, Wright N, Fox K, Svoboda K: Structural plasticity underlies experience-dependent functional plasticity of cortical circuits. The Journal of Neuroscience 2010, 30:4927-32.

94. Wood L, Shepherd GMG: Synaptic circuit abnormalities of motor-frontal layer 2/3 pyramidal neurons in a mutant mouse model of Rett syndrome. Neurobiology of disease 2010, 38:281-7.

95. Xia A, Gao SS, Yuan T, Osborn A, Bress A, Pfister M, Maricich SM, Pereira FA, Oghalai JS: Deficient forward transduction and enhanced reverse transduction in the alpha tectorin C1509G human hearing loss mutation. Disease models & mechanisms 2010, 3:209-23.

96. Xu X, Olivas ND, Levi R, Ikrar T, Nenadic Z: High precision and fast functional mapping of cortical circuitry through a novel combination of voltage sensitive dye imaging and laser scanning photostimulation. Journal of neurophysiology 2010, 103:2301-12.

97. Yuan T, Gao SS, Saggau P, Oghalai JS: Calcium imaging of inner ear hair cells within the cochlear epithelium of mice using two-photon microscopy. Journal of biomedical optics 2010, 15:016002.

98. Chia TH, Levene MJ: In vivo imaging of deep cortical layers using a microprism. Journal of visualized experiments?: JoVE 2009, [no volume].

99. Chia TH, Levene MJ: Microprisms for in vivo multilayer cortical imaging. Journal of neurophysiology 2009, 102:1310-4.

100. Chow DK, Groszer M, Pribadi M, Machniki M, Carmichael ST, Liu X, Trachtenberg JT: Laminar and compartmental regulation of dendritic growth in mature cortex. Nature neuroscience 2009, 12:116-8.

101. Christie JM, Jahr CE: Selective expression of ligand-gated ion channels in L5 pyramidal cell axons. Journal of Neuroscience 2009, 29:11441.

102. Ding JB, Takasaki KT, Sabatini BL: Supraresolution imaging in brain slices using stimulated-emission depletion two-photon laser scanning microscopy. Neuron 2009, 63:429--437.

103. Dombeck DA, Graziano MS, Tank DW: Functional clustering of neurons in motor cortex determined by cellular resolution imaging in awake behaving mice. Journal of Neuroscience 2009, 29:13751-60.

104. Dreosti E, Odermatt B, Dorostkar MM, Lagnado L: A genetically encoded reporter of synaptic activity in vivo. Nature methods 2009, 6:883-9.

105. Golshani P, Gonçalves JT, Khoshkhoo S, Mostany R, Smirnakis S, Portera-Cailliau C: Internally mediated developmental desynchronization of neocortical network activity. Journal of Neuroscience 2009, 29:10890.

106. Higley MJM, Soler-Llavina GJ, Sabatini BL: Cholinergic modulation of multivesicular release regulates striatal synaptic potency and integration. Nature neuroscience 2009, 12:1121-8.

107. Holbro N, Grunditz Å, Oertner TG: Differential distribution of endoplasmic reticulum controls metabotropic signaling and plasticity at hippocampal synapses. Proceedings of the National Academy of Sciences 2009, 106:15055.

108. Holtmaat A, Bonhoeffer T, Chow DK, Chuckowree J, De Paola V, Hofer SB, Hübener M, Keck T, Knott G, Lee W-CA, et al.: Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window. Nature protocols 2009, 4:1128-44.

109. Hoogland TM, Kuhn B, Göbel W, Huang W, Nakai J, Helmchen F, Flint J, Wang SSH: Radially expanding transglial calcium waves in the intact cerebellum. Proceedings of the National Academy of Sciences 2009, 106:3496.

110. Judkewitz B, Rizzi M, Kitamura K, Häusser M: Targeted single-cell electroporation of mammalian neurons in vivo. Nature protocols 2009, 4:862-9.

111. Knott GW, Holtmaat A, Trachtenberg JT, Svoboda K, Welker E: A protocol for preparing GFP-labeled neurons previously imaged in vivo and in slice preparations for light and electron microscopic analysis. Nature protocols 2009, 4:1145-56.

112. Lee CC, Sherman SM: Glutamatergic inhibition in sensory neocortex. Cerebral cortex 2009, 19:2281-9.

113. Lewis TL, Mao T, Svoboda K, Arnold DB: Myosin-dependent targeting of transmembrane proteins to neuronal dendrites. Nature neuroscience 2009, 12:568-76.

114. Liu B-hua, Li P, Li Y-tang, Sun YJ, Yanagawa Y, Obata K, Zhang LI, Tao HW: Visual receptive field structure of cortical inhibitory neurons revealed by two-photon imaging guided recording. Journal of Neuroscience 2009, 29:10520-32.

115. Llano DA, Sherman SM: Differences in intrinsic properties and local network connectivity of identified layer 5 and layer 6 adult mouse auditory corticothalamic neurons support a dual corticothalamic projection hypothesis. Cerebral cortex 2009, 19:2810-26.

116. Matter C, Pribadi M, Liu X, Trachtenberg JT: Delta-catenin is required for the maintenance of neural structure and function in mature cortex in vivo. Neuron 2009, 64:320-7.

117. O'Brien GS, Martin SM, Söllner C, Wright GJ, Becker CG, Portera-Cailliau C, Sagasti A: Developmentally regulated impediments to skin reinnervation by injured peripheral sensory axon terminals. Current biology 2009, 19:2086-90.

118. O'Brien G, Rieger S: Two-photon axotomy and time-lapse confocal imaging in live zebrafish embryos. Journal of visualized experiments?: JoVE 2009, [no volume].

119. Ozden I, Sullivan MR, Lee HM, Wang SS-H: Reliable coding emerges from coactivation of climbing fibers in microbands of cerebellar Purkinje neurons. Journal of Neuroscience 2009, 29:10463-73.

120. Petreanu L, Mao T, Sternson SM, Svoboda K: The subcellular organization of neocortical excitatory connections. Nature 2009, 457:1142-5.

121. Petrof I, Sherman SM: Synaptic properties of the mammillary and cortical afferents to the anterodorsal thalamic nucleus in the mouse. Journal of Neuroscience 2009, 29:7815-9.

122. Schoenenberger P, Gerosa D, Oertner TG: Temporal control of immediate early gene induction by light. PLoS One 2009, 4:e8185.

123. Schultz SR, Kitamura K, Post-Uiterweer A, Krupic J, Häusser M: Spatial pattern coding of sensory information by climbing fiber-evoked calcium signals in networks of neighboring cerebellar Purkinje cells. The Journal of Neuroscience 2009, 29:8005-15.

124. Simons SB, Escobedo Y, Yasuda R, Dudek SM: Regional differences in hippocampal calcium handling provide a cellular mechanism for limiting plasticity. Proceedings of the National Academy of Sciences of the United States of America 2009, 106:14080-4.

125. Tian L, Hires SA, Mao T, Huber D, Chiappe ME, Chalasani SH, Petreanu L, Akerboom J, McKinney SA, Schreiter ER, et al.: Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators. Nature methods 2009, 6:875-81.

126. Virk MS, Arttamangkul S, Birdsong WT, Williams JT: Buprenorphine is a weak partial agonist that inhibits opioid receptor desensitization. The Journal of Neuroscience 2009, 29:7341-8.

127. Watt AJ, Cuntz H, Mori M, Nusser Z, Sjöström PJ, Häusser M: Traveling waves in developing cerebellar cortex mediated by asymmetrical Purkinje cell connectivity. Nature neuroscience 2009, 12:463-73.

128. Wood L, Gray NW, Zhou Z, Greenberg ME, Shepherd GMG: Synaptic circuit abnormalities of motor-frontal layer 2/3 pyramidal neurons in an RNA interference model of methyl-CpG-binding protein 2 deficiency. Journal of Neuroscience 2009, 29:12440-8.

129. Yu YJ, Arttamangkul S, Evans CJ, Williams JT, von Zastrow M: Neurokinin 1 receptors regulate morphine-induced endocytosis and desensitization of mu-opioid receptors in CNS neurons. Journal of Neuroscience 2009, 29:222-33.

130. Zhao C, Kao JPY, Kanold PO: Functional excitatory microcircuits in neonatal cortex connect thalamus and layer 4. Journal of Neuroscience 2009, 29:15479-88.

131. Zhong H, Sia GM, Sato TR, Gray NW, Mao T, Khuchua Z, Huganir RL, Svoboda K: Subcellular dynamics of type II PKA in neurons. Neuron 2009, 62:363--374.

132. Zito K, Scheuss V, Knott G, Hill T, Svoboda K: Rapid functional maturation of nascent dendritic spines. Neuron 2009, 61:247--258.

133. Arttamangkul S, Quillinan N, Low MJ, von Zastrow M, Pintar J, Williams JT: Differential activation and trafficking of $\mu$-opioid receptors in brain slices. Molecular pharmacology 2008, 74:972.

134. Atasoy D, Aponte Y, Su HH, Sternson SM: A FLEX switch targets Channelrhodopsin-2 to multiple cell types for imaging and long-range circuit mapping. Journal of Neuroscience 2008, 28:7025-30.

135. Bigelow AW, Geard CR, Randers-Pehrson G, Brenner DJ: Microbeam-integrated multiphoton imaging system. The Review of scientific instruments 2008, 79:123707.

136. Bureau I, Shepherd GMG, Svoboda K: Circuit and plasticity defects in the developing somatosensory cortex of FMR1 knock-out mice. Journal of Neuroscience 2008, 28:5178-88.

137. Christie JM, Jahr CE: Dendritic NMDA receptors activate axonal calcium channels. Neuron 2008, 60:298--307.

138. Cruz-Martín A, Schweizer FE: Imbalance between excitation and inhibition among synaptic connections of CA3 pyramidal neurons in cultured hippocampal slices. The European journal of neuroscience 2008, 27:1353-63.

139. Gandhi SP, Yanagawa Y, Stryker MP: Delayed plasticity of inhibitory neurons in developing visual cortex. Proceedings of the National Academy of Sciences 2008, 105:16797.

140. Golshani P, Portera-Cailliau C: In vivo 2-photon calcium imaging in layer 2/3 of mice. Journal of visualized experiments?: JoVE 2008, [no volume].

141. Gregor T, McGregor AP, Wieschaus EF: Shape and function of the Bicoid morphogen gradient in dipteran species with different sized embryos. Developmental biology 2008, 316:350-8.

142. Grunditz Å, Holbro N, Tian L, Zuo Y, Oertner TG: Spine neck plasticity controls postsynaptic calcium signals through electrical compartmentalization. Journal of Neuroscience 2008, 28:13457.

143. Harvey CD, Ehrhardt AG, Cellurale C, Zhong H, Yasuda R, Davis RJ, Svoboda K: A genetically encoded fluorescent sensor of ERK activity. Proceedings of the National Academy of Sciences 2008, 105:19264.

144. Harvey CD, Yasuda R, Zhong H, Svoboda K: The spread of Ras activity triggered by activation of a single dendritic spine. Science 2008, 321:136-40.

145. Kitamura K, Judkewitz B, Kano M, Denk W, Häusser M: Targeted patch-clamp recordings and single-cell electroporation of unlabeled neurons in vivo. Nature methods 2008, 5:61-7.

146. Kuhlman SJ, Huang ZJ: High-resolution labeling and functional manipulation of specific neuron types in mouse brain by Cre-activated viral gene expression. PLoS One 2008, 3:e2005.

147. Lee CC, Sherman SM: Synaptic properties of thalamic and intracortical inputs to layer 4 of the first- and higher-order cortical areas in the auditory and somatosensory systems. Journal of neurophysiology 2008, 100:317-26.

148. Major G, Polsky A, Denk W, Schiller J, Tank DW: Spatiotemporally graded NMDA spike/plateau potentials in basal dendrites of neocortical pyramidal neurons. Journal of neurophysiology 2008, 99:2584-601.

149. Mao T, O'Connor DH, Scheuss V, Nakai J, Svoboda K: Characterization and subcellular targeting of GCaMP-type genetically-encoded calcium indicators. PLoS One 2008, 3:e1796.

150. Mostany R, Portera-Cailliau C: A method for 2-photon imaging of blood flow in the neocortex through a cranial window. Journal of visualized experiments?: JoVE 2008, [no volume].

151. Ozden I, Lee HM, Sullivan MR, Wang SS-H: Identification and clustering of event patterns from in vivo multiphoton optical recordings of neuronal ensembles. Journal of neurophysiology 2008, 100:495-503.

152. Riegel AC, Williams JT: CRF facilitates calcium release from intracellular stores in midbrain dopamine neurons. Neuron 2008, 57:559--570.

153. Weiler N, Wood L, Yu J, Solla SA, Shepherd GMG: Top-down laminar organization of the excitatory network in motor cortex. Nature neuroscience 2008, 11:360-6.

154. Yu J, Anderson CT, Kiritani T, Sheets PL, Wokosin DL, Wood L, Shepherd GMG: Local-Circuit Phenotypes of Layer 5 Neurons in Motor-Frontal Cortex of YFP-H Mice. Frontiers in neural circuits 2008, 2:6.

155. Zhang Y-P, Holbro N, Oertner TG: Optical induction of plasticity at single synapses reveals input-specific accumulation of alphaCaMKII. Proceedings of the National Academy of Sciences of the United States of America 2008, 105:12039-44.

156. Carter AG, Soler-Llavina GJ, Sabatini BL: Timing and location of synaptic inputs determine modes of subthreshold integration in striatal medium spiny neurons. Journal of Neuroscience 2007, 27:8967.

157. Dombeck DA, Khabbaz AN, Collman F, Adelman TL, Tank DW: Imaging large-scale neural activity with cellular resolution in awake, mobile mice. Neuron 2007, 56:43--57.

158. Gregor T, Tank DW, Wieschaus EF, Bialek W: Probing the limits to positional information. Cell 2007, 130:153--164.

159. Gregor T, Wieschaus EF, McGregor AP, Bialek W, Tank DW: Stability and nuclear dynamics of the bicoid morphogen gradient. Cell 2007, 130:141-52.

160. Harvey CD, Svoboda K: Locally dynamic synaptic learning rules in pyramidal neuron dendrites. Nature 2007, 450:1195--1200.

161. Huber D, Petreanu L, Ghitani N, Ranade S, Hromádka T, Mainen Z, Svoboda K: Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving mice. Nature 2007, 451:61--64.

162. Lam Y-W, Sherman SM: Different topography of the reticulothalmic inputs to first- and higher-order somatosensory thalamic relays revealed using photostimulation. Journal of neurophysiology 2007, 98:2903-9.

163. Petreanu L, Huber D, Sobczyk A, Svoboda K: Channelrhodopsin-2-assisted circuit mapping of long-range callosal projections. Nature neuroscience 2007, 10:663-8.

164. Sato TR, Gray NW, Mainen ZF, Svoboda K: The functional microarchitecture of the mouse barrel cortex. PLoS biology 2007, 5:e189.

165. Sjöström PJ, Turrigiano GG, Nelson SB: Multiple forms of long-term plasticity at unitary neocortical layer 5 synapses. Neuropharmacology 2007, 52:176-84.

166. Sobczyk A, Svoboda K: Activity-dependent plasticity of the NMDA-receptor fractional Ca2+ current. Neuron 2007, 53:17--24.

167. Zhang Y-P, Oertner TG: Optical induction of synaptic plasticity using a light-sensitive channel. Nature methods 2007, 4:139-41.

168. Arttamangkul S, Torrecilla M, Kobayashi K, Okano H, Williams JT: Separation of $\mu$-Opioid Receptor Desensitization and Internalization: Endogenous Receptors in Primary Neuronal Cultures. Journal of Neuroscience 2006, 26:4118.

169. Birbach A, Verkuyl JM, Matus A: Reversible, activity-dependent targeting of profilin to neuronal nuclei. Experimental cell research 2006, 312:2279-87.

170. Bureau I, von Saint Paul F, Svoboda K: Interdigitated paralemniscal and lemniscal pathways in the mouse barrel cortex. PLoS biology 2006, 4:e382.

171. De Paola V, Holtmaat A, Knott G, Song S, Wilbrecht L, Caroni P, Svoboda K: Cell type-specific structural plasticity of axonal branches and boutons in the adult neocortex. Neuron 2006, 49:861--875.

172. Gray NW, Weimer RM, Bureau I, Svoboda K: Rapid redistribution of synaptic PSD-95 in the neocortex in vivo. PLoS Biology 2006, 4:e370.

173. Holtmaat A, Wilbrecht L, Knott GW, Welker E, Svoboda K: Experience-dependent and cell-type-specific spine growth in the neocortex. Nature 2006, 441:979-83.

174. Knott GW, Holtmaat A, Wilbrecht L, Welker E, Svoboda K: Spine growth precedes synapse formation in the adult neocortex in vivo. Nature neuroscience 2006, 9:1117-24.

175. Lam Y-W, Nelson CS, Sherman SM: Mapping of the functional interconnections between thalamic reticular neurons using photostimulation. Journal of neurophysiology 2006, 96:2593-600.

176. Papageorgas P, Maroulis D, Anagnostopoulos G, Albrecht H, Wagner B, Iakovidis DK, Theofanous NG: A high-performance imaging and control system for a micromirror-based laser-scanning endoscope device. IEEE Transactions on Instrumentation and Measurement 2006, 55:1725 - 1733.

177. Scheuss V, Yasuda R, Sobczyk A, Svoboda K: Nonlinear [Ca2+] signaling in dendrites and spines caused by activity-dependent depression of Ca2+ extrusion. Journal of Neuroscience 2006, 26:8183.

178. Sjöström PJ, Häusser M: A cooperative switch determines the sign of synaptic plasticity in distal dendrites of neocortical pyramidal neurons. Neuron 2006, 51:227-38.

179. Soler-Llavina GJ, Sabatini BL: Synapse-specific plasticity and compartmentalized signaling in cerebellar stellate cells. Nature neuroscience 2006, 9:798-806.

180. Vigot R, Barbieri S, Bräuner-Osborne H, Turecek R, Shigemoto R, Zhang YP, Luján R, Jacobson LH, Biermann B, Fritschy JM, et al.: Differential compartmentalization and distinct functions of GABAB receptor variants. Neuron 2006, 50:589--601.

181. Yasuda R, Harvey CD, Zhong H, Sobczyk A, Van Aelst L, Svoboda K: Supersensitive Ras activation in dendrites and spines revealed by two-photon fluorescence lifetime imaging. Nature neuroscience 2006, 9:283--291.

182. Egger V, Svoboda K, Mainen ZF: Dendrodendritic synaptic signals in olfactory bulb granule cells: local spine boost and global low-threshold spike. Journal of Neuroscience 2005, 25:3521.

183. Gregor T, Bialek W, de Ruyter van Steveninck RR, Tank DW, Wieschaus EF: Diffusion and scaling during early embryonic pattern formation. Proceedings of the National Academy of Sciences of the United States of America 2005, 102:18403-7.

184. Holtmaat AJGD, Trachtenberg JT, Wilbrecht L, Shepherd GM, Zhang X, Knott GW, Svoboda K: Transient and persistent dendritic spines in the neocortex in vivo. Neuron 2005, 45:279-91.

185. Ngo-Anh TJ, Bloodgood BL, Lin M, Sabatini BL, Maylie J, Adelman JP: SK channels and NMDA receptors form a Ca2+-mediated feedback loop in dendritic spines. Nature neuroscience 2005, 8:642-9.

186. Ohki K, Chung S, Ch'ng YH, Kara P, Reid RC: Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex. Nature 2005, 433:597-603.

187. Portera-Cailliau C, Weimer RM, De Paola V, Caroni P, Svoboda K: Diverse modes of axon elaboration in the developing neocortex. PLoS Biology 2005, 3:e272.

188. Shepherd GMG, Stepanyants A, Bureau I, Chklovskii D, Svoboda K: Geometric and functional organization of cortical circuits. Nature neuroscience 2005, 8:782-90.

189. Shepherd GMG, Svoboda K: Laminar and columnar organization of ascending excitatory projections to layer 2/3 pyramidal neurons in rat barrel cortex. Journal of Neuroscience 2005, 25:5670-9.

190. Sobczyk A, Scheuss V, Svoboda K: NMDA receptor subunit-dependent [Ca2+] signaling in individual hippocampal dendritic spines. Journal of Neuroscience 2005, 25:6037.

191. Song S, Sjöström PJ, Reigl M, Nelson S, Chklovskii DB: Highly nonrandom features of synaptic connectivity in local cortical circuits. PLoS biology 2005, 3:e68.

192. Sternson SM, Shepherd GMG, Friedman JM: Topographic mapping of VMH --> arcuate nucleus microcircuits and their reorganization by fasting. Nature neuroscience 2005, 8:1356-63.

193. Brünig I, Kaech S, Brinkhaus H, Oertner TG, Matus A: Influx of extracellular calcium regulates actin-dependent morphological plasticity in dendritic spines. Neuropharmacology 2004, 47:669--676.

194. Bureau I, Shepherd GMG, Svoboda K: Precise development of functional and anatomical columns in the neocortex. Neuron 2004, 42:789-801.

195. Carter AG, Sabatini BL: State-dependent calcium signaling in dendritic spines of striatal medium spiny neurons. Neuron 2004, 44:483-93.

196. Nimchinsky EA, Yasuda R, Oertner TG, Svoboda K: The number of glutamate receptors opened by synaptic stimulation in single hippocampal spines. Journal of Neuroscience 2004, 24:2054.

197. Pologruto TA, Yasuda R, Svoboda K: Monitoring neural activity and [Ca2+] with genetically encoded Ca2+ indicators. Journal of Neuroscience 2004, 24:9572.

198. Wang Y, Guo HF, Pologruto TA, Hannan F, Hakker I, Svoboda K, Zhong Y: Stereotyped odor-evoked activity in the mushroom body of Drosophila revealed by green fluorescent protein-based Ca2+ imaging. Journal of Neuroscience 2004, 24:6507.

199. Zito K, Knott G, Shepherd GMG, Shenolikar S, Svoboda K: Induction of spine growth and synapse formation by regulation of the spine actin cytoskeleton. Neuron 2004, 44:321-34.

200. Egger V, Svoboda K, Mainen ZF: Mechanisms of Lateral Inhibition in the Olfactory Bulb: Efficiency and Modulation of Spike-Evoked Calcium Influx into Granule Cells. Journal of Neuroscience 2003, 23:7551-7558.

201. Shepherd GMG, Pologruto TA, Svoboda K: Circuit analysis of experience-dependent plasticity in the developing rat barrel cortex. Neuron 2003, 38:277-89.

202. Trachtenberg JT, Chen BE, Knott GW, Feng G, Sanes JR, Welker E, Svoboda K: Long-term in vivo imaging of experience-dependent synaptic plasticity in adult cortex. Nature 2002, 420:788-94.

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