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Mendeley!

We are maintaining the live 'official' list of ScanImage & Ephus citing/using papers on Mendeley. Periodically we reproduce a snapshot of that list below. You may join Mendeley and then follow the ScanImage & Ephus group to be able to search the papers in the group, using either the web client or the desktop client.

Be Counted!

If you don't see on the list below a paper you've written, or know of, that uses ScanImage and/or Ephus, please contact us! Note you can search the text below using your web browser's Find feature, e.g. Ctrl+F.

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Snapshot: 2013-05-12
Current total primary research publications: 264

1. Rose T, Schoenenberger P, Jezek K, Oertner TG. Developmental Refinement of Vesicle Cycling at Schaffer Collateral Synapses. Neuron. 2013;77(6):1109--1121.

2. Horton NG, Wang K, Kobat D, Clark CG, Wise FW, Schaffer CB, Xu C. In vivo three-photon microscopy of subcortical structures within an intact mouse brain. Nature Photonics. 2013;7(3):205--209.

3. Wachowiak M, Economo MN, Diaz-Quesada M, Brunert D, Wesson DW, White JA, Rothermel M. Optical Dissection of Odor Information Processing In Vivo Using GCaMPs Expressed in Specified Cell Types of the Olfactory Bulb. Journal of Neuroscience. 2013;33(12):5285--5300.

4. Oliveira AF, Yasuda R. An Improved Ras Sensor for Highly Sensitive and Quantitative FRET-FLIM Imaging. PloS one. 2013;8(1):e52874.

5. Thériault G, De Koninck Y, McCarthy N. Extended depth of field microscopy for rapid volumetric two-photon imaging. Optics express. 2013;21(8):10095--104.

6. Hooks BM, Mao T, Gutnisky DA, Yamawaki N, Svoboda K, Shepherd GMG. Organization of cortical and thalamic input to pyramidal neurons in mouse motor cortex. Journal of Neuroscience. 2013;33(2):748--60.

7. Bock R, Shin JH, Kaplan AR, Dobi A, Markey E, Kramer PF, Gremel CM, Christensen CH, Adrover MF, Alvarez VA. Strengthening the accumbal indirect pathway promotes resilience to compulsive cocaine use. Nature Neuroscience. 2013.

8. Robles E, Filosa A, Baier H. Precise Lamination of Retinal Axons Generates Multiple Parallel Input Pathways in the Tectum. Journal of Neuroscience. 2013;33(11):5027--5039.

9. Mostany R, Anstey JE, Crump KL, Maco B, Knott G, Portera-Cailliau C. Altered Synaptic Dynamics during Normal Brain Aging. Journal of Neuroscience. 2013;33(9):4094--4104.

10. Hill TC, Zito K. LTP-induced long-term stabilization of individual nascent dendritic spines. Journal of Neuroscience. 2013;33(2):678--86.

11. Acker CD, Loew LM. Characterization of voltage-sensitive dyes in living cells using two-photon excitation. Methods in molecular biology (Clifton, N.J.). 2013;995:147--60.

12. Schneider ER, Civillico EF, Wang SS-H. CALCIUM-BASED DENDRITIC EXCITABILITY AND ITS REGULATION IN THE DEEP CEREBELLAR NUCLEI. Journal of neurophysiology. 2013.

13. Oh WC, Hill TC, Zito K. Synapse-specific and size-dependent mechanisms of spine structural plasticity accompanying synaptic weakening. Proceedings of the National Academy of Sciences. 2013;110(4):E305--12.

14. Beier KT, Borghuis BG, El-Danaf RN, Huberman AD, Demb JB, Cepko CL. Transsynaptic tracing with vesicular stomatitis virus reveals novel retinal circuitry. Journal of Neuroscience. 2013;33(1):35--51.

15. Takasaki KT, Ding JB, Sabatini BL. Live-Cell Superresolution Imaging by Pulsed STED Two-Photon Excitation Microscopy. Biophysical journal. 2013;104(4):770--7.

16. Marvin JS, Borghuis BG, Tian L, Cichon J, Harnett MT, Akerboom J, Gordus A, Renninger SL, Chen T-W, Bargmann CI, Orger MB, Schreiter ER, Demb JB, Gan W-B, Hires SA, Looger LL. An optimized fluorescent probe for visualizing glutamate neurotransmission. Nature methods. 2013;10(2):162--70.

17. Szatmari EM, Oliveira AF, Sumner EJ, Yasuda R. Centaurin- 1-Ras-Elk-1 Signaling at Mitochondria Mediates  -Amyloid-Induced Synaptic Dysfunction.- Journal of Neuroscience. 2013;33(12):5367-5374.

18. Murray TA, Levene MJ. Singlet gradient index lens for deep in vivo multiphoton microscopy. Journal of biomedical optics. 2012;17(2):021106.

19. Nauhaus I, Nielsen KJ, Callaway EM. Nonlinearity of two-photon Ca2+ imaging yields distorted measurements of tuning for V1 neuronal populations. Journal of neurophysiology. 2012;107(3):923--36.

20. Li Y, Lu H, Cheng P, Ge S, Xu H, Shi S-H, Dan Y. Clonally related visual cortical neurons show similar stimulus feature selectivity. Nature. 2012;advance on.

21. Gelbart MA, He B, Martin AC, Thiberge SY, Wieschaus EF, Kaschube M. Volume conservation principle involved in cell lengthening and nucleus movement during tissue morphogenesis. Proceedings of the National Academy of Sciences. 2012;109(47):19298--303.

22. Nauhaus I, Nielsen KJ, Disney AA, Callaway EM. Orthogonal micro-organization of orientation and spatial frequency in primate primary visual cortex. Nature neuroscience. 2012;15(12):1683--90.

23. Kiritani T, Wickersham IR, Seung HS, Shepherd GMG. Hierarchical connectivity and connection-specific dynamics in the corticospinal-corticostriatal microcircuit in mouse motor cortex. Journal of Neuroscience. 2012;32(14):4992--5001.

24. Suter BA, Migliore M, Shepherd GMG. Intrinsic Electrophysiology of Mouse Corticospinal Neurons: a Class-Specific Triad of Spike-Related Properties. Cerebral cortex (New York, N.Y.?: 1991). 2012.

25. Kato HK, Chu MW, Isaacson JS, Komiyama T. Dynamic sensory representations in the olfactory bulb: modulation by wakefulness and experience. Neuron. 2012;76(5):962--75.

26. Apicella AJ, Wickersham IR, Seung HS, Shepherd GMG. Laminarly orthogonal excitation of fast-spiking and low-threshold-spiking interneurons in mouse motor cortex. Journal of Neuroscience. 2012;32(20):7021--33.

27. Tritsch NX, Ding JB, Sabatini BL. Dopaminergic neurons inhibit striatal output through non-canonical release of GABA. Nature. 2012;490(7419):262--6.

28. Ozden I, Dombeck DA, Hoogland TM, Tank DW, Wang SS-H. Widespread state-dependent shifts in cerebellar activity in locomoting mice. PloS one. 2012;7(8):e42650.

29. Rivera DR, Brown CM, Ouzounov DG, Webb WW, Xu C. Multifocal multiphoton endoscope. Optics letters. 2012;37(8):1349--51.

30. Packer AM, Peterka DS, Hirtz JJ, Prakash R, Deisseroth K, Yuste R. Two-photon optogenetics of dendritic spines and neural circuits. Nature Methods. 2012;9(12):1202--5.

31. Schärer Y-PZ, Shum J, Moressis A, Friedrich RW. Dopaminergic modulation of synaptic transmission and neuronal activity patterns in the zebrafish homolog of olfactory cortex. Frontiers in neural circuits. 2012;6:76.

32. Kuhn B, Ozden I, Lampi Y, Hasan MT, Wang SS-H. An amplified promoter system for targeted expression of calcium indicator proteins in the cerebellar cortex. Frontiers in neural circuits. 2012;6:49.

33. Xu N, Harnett MT, Williams SR, Huber D, O'Connor DH, Svoboda K, Magee JC. Nonlinear dendritic integration of sensory and motor input during an active sensing task. Nature. 2012;492(7428):247--51.

34. Parra SG, Vesuna SS, Murray TA, Levene MJ. Multiphoton microscopy of cleared mouse brain expressing YFP. Journal of visualized experiments?: JoVE. 2012;(67):e3848.

35. Paukert M, Bergles DE. Reduction of motion artifacts during in vivo two-photon imaging of brain through heartbeat triggered scanning. The Journal of physiology. 2012;590(Pt 13):2955--63.

36. Odermatt B, Nikolaev A, Lagnado L. Encoding of Luminance and Contrast by Linear and Nonlinear Synapses in the Retina. Neuron. 2012;73(4):758--773.

37. Arttamangkul S, Lau EK, Lu H-W, Williams JT. Desensitization and Trafficking of mu-opioid Receptors in Locus Coeruleus Neurons: Modulation by Kinases. Molecular pharmacology. 2012;81(3):348--55.

38. Akerboom J, Chen T-W, Wardill TJ, Tian L, Marvin JS, Mutlu S, Calderón NC, Esposti F, Borghuis BG, Sun XR, Gordus A, Orger MB, Portugues R, Engert F, Macklin JJ, Filosa A, Aggarwal A, Kerr RA, Takagi R, Kracun S, Shigetomi E, Khakh BS, Baier H, Lagnado L, Wang SS-H, Bargmann CI, Kimmel BE, Jayaraman V, Svoboda K, Kim DS, Schreiter ER, Looger LL. Optimization of a GCaMP calcium indicator for neural activity imaging. Journal of Neuroscience. 2012;32(40):13819--40.

39. Zariwala HA, Borghuis BG, Hoogland TM, Madisen L, Tian L, De Zeeuw CI, Zeng H, Looger LL, Svoboda K, Chen T-W. A Cre-Dependent GCaMP3 Reporter Mouse for Neuronal Imaging In Vivo. Journal of Neuroscience. 2012;32(9):3131--3141.

40. Bundschuh ST, Zhu P, Schärer Y-PZ, Friedrich RW. Dopaminergic modulation of mitral cells and odor responses in the zebrafish olfactory bulb. Journal of Neuroscience. 2012;32(20):6830--40.

41. Zhu P, Fajardo O, Shum J, Zhang Schärer Y-P, Friedrich RW. High-resolution optical control of spatiotemporal neuronal activity patterns in zebrafish using a digital micromirror device. Nature protocols. 2012;7(7):1410--25.

42. Cruz-Martín A, Crespo M, Portera-Cailliau C. Glutamate induces the elongation of early dendritic protrusions via mGluRs in wild type mice, but not in fragile X mice. PloS one. 2012;7(2):e32446.

43. Xiong Q, Oviedo H V., Trotman LC, Zador AM. PTEN Regulation of Local and Long-Range Connections in Mouse Auditory Cortex. Journal of Neuroscience. 2012;32(5):1643--1652.

44. Jacob V, Petreanu L, Wright N, Svoboda K, Fox K. Regular spiking and intrinsic bursting pyramidal cells show orthogonal forms of experience-dependent plasticity in layer v of barrel cortex. Neuron. 2012;73(2):391--404.

45. Drocco JA, Wieschaus EF, Tank DW. The synthesis-diffusion-degradation model explains Bicoid gradient formation in unfertilized eggs. Physical biology. 2012;9(5):055004.

46. Viswanathan S, Bandyopadhyay S, Kao JPY, Kanold PO. Changing Microcircuits in the Subplate of the Developing Cortex. Journal of Neuroscience. 2012;32(5):1589--1601.

47. Wyatt RM, Tring E, Trachtenberg JT. Pattern and not magnitude of neural activity determines dendritic spine stability in awake mice. Nature neuroscience. 2012;15(7):949--51.

48. Petreanu L, Gutnisky DA, Huber D, Xu N, O'Connor DH, Tian L, Looger L, Svoboda K. Activity in motor-sensory projections reveals distributed coding in somatosensation. Nature. 2012;489(7415):299--303.

49. Marshel JH, Kaye AP, Nauhaus I, Callaway EM. Anterior-posterior direction opponency in the superficial mouse lateral geniculate nucleus. Neuron. 2012;76(4):713--20.

50. Lim H, Danias J. Label-free morphometry of retinal nerve fiber bundles by second-harmonic-generation microscopy. Optics letters. 2012;37(12):2316--8.

51. Buchanan KA, Blackman A V, Moreau AW, Elgar D, Costa RP, Lalanne T, Tudor Jones AA, Oyrer J, Sjöström PJ. Target-specific expression of presynaptic NMDA receptors in neocortical microcircuits. Neuron. 2012;75(3):451--66.

52. Rivera DR, Brown CM, Ouzounov DG, Webb WW, Xu C. Use of a lensed fiber for a large-field-of-view, high-resolution, fiber-scanning microendoscope. Optics letters. 2012;37(5):881--3.

53. Ertürk A, Mauch CP, Hellal F, Förstner F, Keck T, Becker K, Jährling N, Steffens H, Richter M, Hübener M, Kramer E, Kirchhoff F, Dodt HU, Bradke F. Three-dimensional imaging of the unsectioned adult spinal cord to assess axon regeneration and glial responses after injury. Nature medicine. 2012;18(1):166--71.

54. Marra V, Burden JJ, Thorpe JR, Smith IT, Smith SL, Häusser M, Branco T, Staras K. A preferentially segregated recycling vesicle pool of limited size supports neurotransmission in native central synapses. Neuron. 2012;76(3):579--89.

55. Johnston DG, Denizet M, Mostany R, Portera-Cailliau C. Chronic In Vivo Imaging Shows No Evidence of Dendritic Plasticity or Functional Remapping in the Contralesional Cortex after Stroke. Cerebral cortex (New York, N.Y.?: 1991). 2012.

56. Harvey CD, Coen P, Tank DW. Choice-specific sequences in parietal cortex during a virtual-navigation decision task. Nature. 2012;484(7392):62--8.

57. Li Y-T, Ma W-P, Pan C-J, Zhang LI, Tao HW. Broadening of Cortical Inhibition Mediates Developmental Sharpening of Orientation Selectivity. Journal of Neuroscience. 2012;32(12):3981--3991.

58. Kwan AC, Dan Y. Dissection of cortical microcircuits by single-neuron stimulation in vivo. Current biology?: CB. 2012;22(16):1459--67.

59. Seemann KM, Kiefersauer R, Jacob U, Kuhn B. Optical pH detection within a protein crystal. The journal of physical chemistry. B. 2012;116(33):9873--81.

60. Gdalyahu A, Tring E, Polack P-O, Gruver R, Golshani P, Fanselow MS, Silva AJ, Trachtenberg JT. Associative fear learning enhances sparse network coding in primary sensory cortex. Neuron. 2012;75(1):121--32.

61. Scott BB, Gardner T, Ji N, Fee MS, Lois C. Wandering Neuronal Migration in the Postnatal Vertebrate Forebrain. The Journal of neuroscience?: the official journal of the Society for Neuroscience. 2012;32(4):1436--1446.

62. Brown CM, Rivera DR, Pavlova I, Ouzounov DG, Williams WO, Mohanan S, Webb WW, Xu C. In vivo imaging of unstained tissues using a compact and flexible multiphoton microendoscope. Journal of biomedical optics. 2012;17(4):040505.

63. Farrar MJ, Bernstein IM, Schlafer DH, Cleland TA, Fetcho JR, Schaffer CB. Chronic in vivo imaging in the mouse spinal cord using an implanted chamber. Nature methods. 2012;9(3):297--302.

64. Huber D, Gutnisky DA, Peron S, O'Connor DH, Wiegert JS, Tian L, Oertner TG, Looger LL, Svoboda K. Multiple dynamic representations in the motor cortex during sensorimotor learning. Nature. 2012;484(7395):473--478.

65. Adesnik H, Bruns W, Taniguchi H, Huang ZJ, Scanziani M. A neural circuit for spatial summation in visual cortex. Nature. 2012;490(7419):226--31.

66. Lim H, Danias J. Effect of axonal micro-tubules on the morphology of retinal nerve fibers studied by second-harmonic generation. Journal of biomedical optics. 2012;17(11):110502.

67. Atallah BV V., Bruns W, Carandini M, Scanziani M. Parvalbumin-Expressing Interneurons Linearly Transform Cortical Responses to Visual Stimuli. Neuron. 2012;73(1):159--170.

68. Wilson NR, Runyan CA, Wang FL, Sur M. Division and subtraction by distinct cortical inhibitory networks in vivo. Nature. 2012;488(7411):343--8.

69. Lam Y-W, Sherman SM. Functional organization of the thalamic input to the thalamic reticular nucleus. Journal of Neuroscience. 2011;31(18):6791--9.

70. Quillinan N, Lau EK, Virk M, von Zastrow M, Williams JT. Recovery from mu-opioid receptor desensitization after chronic treatment with morphine and methadone. Journal of Neuroscience. 2011;31(12):4434--43.

71. Berndt A, Schoenenberger P, Mattis J, Tye KM, Deisseroth K, Hegemann P, Oertner TG. High-efficiency channelrhodopsins for fast neuronal stimulation at low light levels. Proceedings of the National Academy of Sciences. 2011;108(18):7595--600.

72. Herzog E, Nadrigny F, Silm K, Biesemann C, Helling I, Bersot T, Steffens H, Schwartzmann R, Nagerl U V., El Mestikawy S, Rhee J, Kirchhoff F, Brose N. In Vivo Imaging of Intersynaptic Vesicle Exchange Using VGLUT1Venus Knock-In Mice. Journal of Neuroscience. 2011;31(43):15544--15559.

73. Bégin S, Burgoyne B, Mercier V, Villeneuve A, Vallée R, Côté D. Coherent anti-Stokes Raman scattering hyperspectral tissue imaging with a wavelength-swept system. Biomedical optics express. 2011;2(5):1296--306.

74. Dreosti E, Esposti F, Baden T, Lagnado L. In vivo evidence that retinal bipolar cells generate spikes modulated by light. Nature neuroscience. 2011;14(8):951--2.

75. Kitamura K, Hausser M. Dendritic Calcium Signaling Triggered by Spontaneous and Sensory-Evoked Climbing Fiber Input to Cerebellar Purkinje Cells In Vivo. Journal of Neuroscience. 2011;31(30):10847--10858.

76. Acker CD, Yan P, Loew LM. Single-voxel recording of voltage transients in dendritic spines. Biophysical journal. 2011;101(2):L11--3.

77. Lewis TL, Mao T, Arnold DB. A role for myosin VI in the localization of axonal proteins. PLoS biology. 2011;9(3):e1001021.

78. Baden T, Esposti F, Nikolaev A, Lagnado L. Spikes in Retinal Bipolar Cells Phase-Lock to Visual Stimuli with Millisecond Precision. Current biology. 2011;21(22):1859--69.

79. Vesuna S, Torres R, Levene MJ. Multiphoton fluorescence, second harmonic generation, and fluorescence lifetime imaging of whole cleared mouse organs. Journal of biomedical optics. 2011;16(10):106009.

80. Pugh JR, Jahr CE. Axonal GABAA receptors increase cerebellar granule cell excitability and synaptic activity. Journal of Neuroscience. 2011;31(2):565--74.

81. Hooks BM, Hires SA, Zhang Y-X, Huber D, Petreanu L, Svoboda K, Shepherd GMG. Laminar analysis of excitatory local circuits in vibrissal motor and sensory cortical areas. PLoS biology. 2011;9(1):e1000572.

82. Sedlacek M, Tipton PW, Brenowitz SD. Sustained firing of cartwheel cells in the dorsal cochlear nucleus evokes endocannabinoid release and retrograde suppression of parallel fiber synapses. Journal of Neuroscience. 2011;31(44):15807--17.

83. Stierl M, Stumpf P, Udwari D, Gueta R, Hagedorn R, Losi A, Gärtner W, Petereit L, Efetova M, Schwarzel M, Oertner TG, Nagel G, Hegemann P. Light modulation of cellular cAMP by a small bacterial photoactivated adenylyl cyclase, bPAC, of the soil bacterium Beggiatoa. The Journal of biological chemistry. 2011;286(2):1181--8.

84. Truong T V, Supatto W, Koos DS, Choi JM, Fraser SE. Deep and fast live imaging with two-photon scanned light-sheet microscopy. Nature Methods. 2011;8(9):757--60.

85. Pugh JR, Jahr CE. NMDA Receptor Agonists Fail To Alter Release from Cerebellar Basket Cells. Journal of Neuroscience. 2011;31(46):16550--16555.

86. Middleton JW, Kiritani T, Pedersen C, Turner JG, Shepherd GMG, Tzounopoulos T. Mice with behavioral evidence of tinnitus exhibit dorsal cochlear nucleus hyperactivity because of decreased GABAergic inhibition. Proceedings of the National Academy of Sciences. 2011;108(18):7601--6.

87. Mostany R, Portera-Cailliau C. Absence of large-scale dendritic plasticity of layer 5 pyramidal neurons in peri-infarct cortex. Journal of Neuroscience. 2011;31(5):1734--8.

88. Viaene AN, Petrof I, Sherman SM. Properties of the thalamic projection from the posterior medial nucleus to primary and secondary somatosensory cortices in the mouse. Proceedings of the National Academy of Sciences. 2011;108(44):18156--61.

89. Blumhagen F, Zhu P, Shum J, Schärer Y-PZ, Yaksi E, Deisseroth K, Friedrich RW. Neuronal filtering of multiplexed odour representations. Nature. 2011;479(7374):493--498.

90. Mellios N, Sugihara H, Castro J, Banerjee A, Le C, Kumar A, Crawford B, Strathmann J, Tropea D, Levine SS, Edbauer D, Sur M. miR-132, an experience-dependent microRNA, is essential for visual cortex plasticity. Nature neuroscience. 2011;14(10):1240--2.

91. Marshel JH, Garrett ME, Nauhaus I, Callaway EM. Functional Specialization of Seven Mouse Visual Cortical Areas. Neuron. 2011;72(6):1040--1054.

92. Mostaço-Guidolin LB, Ko AC-T, Popescu DP, Smith MSD, Kohlenberg EK, Shiomi M, Major A, Sowa MG. Evaluation of texture parameters for the quantitative description of multimodal nonlinear optical images from atherosclerotic rabbit arteries. Physics in medicine and biology. 2011;56(16):5319--34.

93. Andermann ML, Kerlin AM, Roumis DK, Glickfeld LL, Reid RC. Functional Specialization of Mouse Higher Visual Cortical Areas. Neuron. 2011;72(6):1025--1039.

94. Chalifoux JR, Carter AG. GABAB receptor modulation of voltage-sensitive calcium channels in spines and dendrites. Journal of Neuroscience. 2011;31(11):4221--32.

95. Viaene AN, Petrof I, Sherman SM. Synaptic Properties of Thalamic Input to the Subgranular Layers of Primary Somatosensory and Auditory Cortices in the Mouse. Journal of Neuroscience. 2011;31(36):12738--12747.

96. Liu CC, Gao SS, Yuan T, Steele C, Puria S, Oghalai JS. Biophysical mechanisms underlying outer hair cell loss associated with a shortened tectorial membrane. Journal of the Association for Research in Otolaryngology?: JARO. 2011;12(5):577--94.

97. Peñagarikano O, Abrahams BS, Herman EI, Winden KD, Gdalyahu A, Dong H, Sonnenblick LI, Gruver R, Almajano J, Bragin A, Golshani P, Trachtenberg JT, Peles E, Geschwind DH. Absence of CNTNAP2 Leads to Epilepsy, Neuronal Migration Abnormalities, and Core Autism-Related Deficits. Cell. 2011;147(1):235--246.

98. Lien AD, Scanziani M. In vivo Labeling of Constellations of Functionally Identified Neurons for Targeted in vitro Recordings. Frontiers in neural circuits. 2011;5:16.

99. Herman MA, Nahir B, Jahr CE. Distribution of extracellular glutamate in the neuropil of hippocampus. PloS one. 2011;6(11):e26501.

100. Farrar MJ, Wise FW, Fetcho JR, Schaffer CB. In vivo imaging of myelin in the vertebrate central nervous system using third harmonic generation microscopy. Biophysical journal. 2011;100(5):1362--71.

101. Kuhlman SJ, Tring E, Trachtenberg JT. Fast-spiking interneurons have an initial orientation bias that is lost with vision. Nature neuroscience. 2011;14(9):1121--3.

102. Woods GF, Oh WC, Boudewyn LC, Mikula SK, Zito K. Loss of PSD-95 Enrichment Is Not a Prerequisite for Spine Retraction. Journal of Neuroscience. 2011;31(34):12129--12138.

103. Miri A, Daie K, Burdine RD, Aksay E, Tank DW. Regression-based identification of behavior-encoding neurons during large-scale optical imaging of neural activity at cellular resolution. Journal of neurophysiology. 2011;105(2):964--80.

104. Chalifoux JR, Carter AG. Glutamate Spillover Promotes the Generation of NMDA Spikes. Journal of Neuroscience. 2011;31(45):16435--16446.

105. Sheets PL, Suter BA, Kiritani T, Chan CS, Surmeier DJ, Shepherd GMG. Corticospinal-specific HCN expression in mouse motor cortex: I(h)-dependent synaptic integration as a candidate microcircuit mechanism involved in motor control.- Journal of neurophysiology. 2011;106(5):2216-31.

106. De Pasquale R, Sherman SM. Synaptic Properties of Corticocortical Connections between the Primary and Secondary Visual Cortical Areas in the Mouse. Journal of Neuroscience. 2011;31(46):16494--16506.

107. Qiu S, Anderson CT, Levitt P, Shepherd GMG. Circuit-specific intracortical hyperconnectivity in mice with deletion of the autism-associated Met receptor tyrosine kinase. Journal of Neuroscience. 2011;31(15):5855--64.

108. Borghuis BG, Tian L, Xu Y, Nikonov SS, Vardi N, Zemelman B V, Looger LL. Imaging light responses of targeted neuron populations in the rodent retina. Journal of Neuroscience. 2011;31(8):2855--67.

109. Miri A, Daie K, Arrenberg AB, Baier H, Aksay E, Tank DW. Spatial gradients and multidimensional dynamics in a neural integrator circuit. Nature Neuroscience. 2011;14(9):1150--9.

110. Hamad MIK, Ma-Högemeier Z-L, Riedel C, Conrads C, Veitinger T, Habijan T, Schulz J-N, Krause M, Wirth MJ, Hollmann M, Wahle P. Cell class-specific regulation of neocortical dendrite and spine growth by AMPA receptor splice and editing variants. Development. 2011;138(19):4301--13.

111. Ramsey AJ, Milenkovic M, Oliveira AF, Escobedo-Lozoya Y, Seshadri S, Salahpour A, Sawa A, Yasuda R, Caron MGMG. Impaired NMDA receptor transmission alters striatal synapses and DISC1 protein in an age-dependent manner. Proceedings of the National Academy of Sciences. 2011;108(14):5795.

112. Tuthill JC, Chiappe ME, Reiser MB. Neural correlates of illusory motion perception in Drosophila. Proceedings of the National Academy of Sciences. 2011;108(23):9685--90.

113. Rosselet C, Fieschi M, Hugues S, Bureau I. Associative learning changes the organization of functional excitatory circuits targeting the supragranular layers of mouse barrel cortex. Frontiers in neural circuits. 2011;4:126.

114. Mao T, Kusefoglu D, Hooks BM, Huber D, Petreanu L, Svoboda K. Long-Range Neuronal Circuits Underlying the Interaction between Sensory and Motor Cortex. Neuron. 2011;72(1):111--123.

115. Viaene AN, Petrof I, Sherman SM. Synaptic properties of thalamic input to layers 2/3 and 4 of primary somatosensory and auditory cortices. Journal of neurophysiology. 2011;105(1):279--92.

116. Ikrar T, Olivas ND, Shi Y, Xu X. Mapping inhibitory neuronal circuits by laser scanning photostimulation. Journal of visualized experiments?: JoVE. 2011;(56).

117. Christie JM, Chiu DN, Jahr CE. Ca(2+)-dependent enhancement of release by subthreshold somatic depolarization.- Nature neuroscience. 2011;14(1):62-8.

118. Bock DD, Lee W-CA, Kerlin AM, Andermann ML, Hood G, Wetzel AW, Yurgenson S, Soucy ER, Kim HS, Reid RC. Network anatomy and in vivo physiology of visual cortical neurons. Nature. 2011;471(7337):177--82.

119. Xia A, Gao SS, Yuan T, Osborn A, Bress A, Pfister M, Maricich SM, Pereira FA, Oghalai JS. Deficient forward transduction and enhanced reverse transduction in the alpha tectorin C1509G human hearing loss mutation. Disease models & mechanisms. 2010;3(3-4):209--23.

120. Sato TR, Svoboda K. The functional properties of barrel cortex neurons projecting to the primary motor cortex. Journal of Neuroscience. 2010;30(12):4256--60.

121. Yuan T, Gao SS, Saggau P, Oghalai JS. Calcium imaging of inner ear hair cells within the cochlear epithelium of mice using two-photon microscopy. Journal of biomedical optics. 2010;15(1):016002.

122. O'Connor DH, Clack NG, Huber D, Komiyama T, Myers EW, Svoboda K. Vibrissa-based object localization in head-fixed mice. Journal of Neuroscience. 2010;30(5):1947--67.

123. Kerlin AM, Andermann ML, Berezovskii VK, Reid RC. Broadly tuned response properties of diverse inhibitory neuron subtypes in mouse visual cortex. Neuron. 2010;67(5):858--71.

124. Chowdhury TG, Jimenez JC, Bomar JM, Cruz-Martin A, Cantle JP, Portera-Cailliau C. Fate of cajal-retzius neurons in the postnatal mouse neocortex. Frontiers in neuroanatomy. 2010;4:10.

125. Parra SG, Chia TH, Zinter JP, Levene MJ. Multiphoton microscopy of cleared mouse organs. Journal of biomedical optics. 2010;15(3):036017.

126. Chiappe ME, Seelig JD, Reiser MB, Jayaraman V. Walking modulates speed sensitivity in Drosophila motion vision. Current biology. 2010;20(16):1470--5.

127. Christie LA, Russell TA, Xu J, Wood L, Shepherd GMG, Contractor A. AMPA receptor desensitization mutation results in severe developmental phenotypes and early postnatal lethality. Proceedings of the National Academy of Sciences. 2010;107(20):9412--7.

128. Shi Y, Nenadic Z, Xu X. Novel use of matched filtering for synaptic event detection and extraction. PloS one. 2010;5(11):e15517.

129. Ma W-P, Liu B-H, Li Y-T, Huang ZJ, Zhang LI, Tao HW. Visual representations by cortical somatostatin inhibitory neurons-selective but with weak and delayed responses. Journal of Neuroscience. 2010;30(43):14371-9.

130. Holbro N, Grunditz A, Wiegert JS, Oertner TG. AMPA receptors gate spine Ca(2+) transients and spike-timing-dependent potentiation. Proceedings of the National Academy of Sciences. 2010;107(36):15975--80.

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208. Kuhlman SJ, Huang ZJ. High-resolution labeling and functional manipulation of specific neuron types in mouse brain by Cre-activated viral gene expression. PLoS One. 2008;3(4):e2005.

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226. Zhang Y-P, Oertner TG. Optical induction of synaptic plasticity using a light-sensitive channel. Nature methods. 2007;4(2):139--41.

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241. Bureau I, von Saint Paul F, Svoboda K. Interdigitated paralemniscal and lemniscal pathways in the mouse barrel cortex. PLoS biology. 2006;4(12):e382.

242. Soler-Llavina GJ, Sabatini BL. Synapse-specific plasticity and compartmentalized signaling in cerebellar stellate cells. Nature neuroscience. 2006;9(6):798--806.

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246. Shepherd GMG, Svoboda K. Laminar and columnar organization of ascending excitatory projections to layer 2/3 pyramidal neurons in rat barrel cortex. Journal of Neuroscience. 2005;25(24):5670--9.

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248. Shepherd GMG, Stepanyants A, Bureau I, Chklovskii D, Svoboda K. Geometric and functional organization of cortical circuits. Nature neuroscience. 2005;8(6):782--90.

249. Egger V, Svoboda K, Mainen ZF. Dendrodendritic synaptic signals in olfactory bulb granule cells: local spine boost and global low-threshold spike. Journal of Neuroscience. 2005;25(14):3521.

250. Gregor T, Bialek W, de Ruyter van Steveninck RR, Tank DW, Wieschaus EF. Diffusion and scaling during early embryonic pattern formation. Proceedings of the National Academy of Sciences. 2005;102(51):18403--7.

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252. Song S, Sjöström PJ, Reigl M, Nelson S, Chklovskii DB. Highly nonrandom features of synaptic connectivity in local cortical circuits. PLoS biology. 2005;3(3):e68.

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258. Bureau I, Shepherd GMG, Svoboda K. Precise development of functional and anatomical columns in the neocortex. Neuron. 2004;42(5):789--801.

259. Nimchinsky EA, Yasuda R, Oertner TG, Svoboda K. The number of glutamate receptors opened by synaptic stimulation in single hippocampal spines. Journal of Neuroscience. 2004;24(8):2054.

260. Carter AG, Sabatini BL. State-dependent calcium signaling in dendritic spines of striatal medium spiny neurons. Neuron. 2004;44(3):483--93.

261. Wang Y, Guo HF, Pologruto TA, Hannan F, Hakker I, Svoboda K, Zhong Y. Stereotyped odor-evoked activity in the mushroom body of Drosophila revealed by green fluorescent protein-based Ca2+ imaging. Journal of Neuroscience. 2004;24(29):6507.

262. Shepherd GMG, Pologruto TA, Svoboda K. Circuit analysis of experience-dependent plasticity in the developing rat barrel cortex. Neuron. 2003;38(2):277--89.

263. Egger V, Svoboda K, Mainen ZF. Mechanisms of Lateral Inhibition in the Olfactory Bulb: Efficiency and Modulation of Spike-Evoked Calcium Influx into Granule Cells. Journal of Neuroscience. 2003;23(20):7551--7558.

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