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We are maintaining the live 'official' list of ScanImage & Ephus citing/using papers on Mendeley. Periodically we reproduce a snapshot of that list below. You may join Mendeley and then follow the ScanImage & Ephus group to be able to search the papers in the group, using either the web client or the desktop client.

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If you don't see on the list below a paper you've written, or know of, that uses ScanImage and/or Ephus, please contact us! Note you can search the text below using your web browser's Find feature, e.g. Ctrl+F.

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Snapshot: 2012-02-03
Current total: 169

1. Kitamura K, Judkewitz B, Kano M, Denk W, Häusser M. Targeted patch-clamp recordings and single-cell electroporation of unlabeled neurons in vivo. Nature methods 2008 Jan;5(1):61-7.
2. Dreosti E, Odermatt B, Dorostkar MM, Lagnado L. A genetically encoded reporter of synaptic activity in vivo. Nature methods 2009 Dec;6(12):883-9.
3. Dreosti E, Esposti F, Baden T, Lagnado L. In vivo evidence that retinal bipolar cells generate spikes modulated by light. Nature neuroscience 2011 Jun;14(8):951-2.
4. Baden T, Esposti F, Nikolaev A, Lagnado L. Spikes in Retinal Bipolar Cells Phase-Lock to Visual Stimuli with Millisecond Precision. Current biology : CB 2011 Nov;21(22):1859-69.
5. Smith SL, Häusser M. Parallel processing of visual space by neighboring neurons in mouse visual cortex. Nature neuroscience 2010 Sep;13(9):1144-9.
6. Kuhlman SJ, Tring E, Trachtenberg JT. Fast-spiking interneurons have an initial orientation bias that is lost with vision. Nature neuroscience 2011 Jul;14(9):1121-3.
7. Chalifoux JR, Carter AG. Glutamate Spillover Promotes the Generation of NMDA Spikes. Journal of Neuroscience 2011 Nov;31(45):16435-16446.
8. Carter AG, Sabatini BL. State-dependent calcium signaling in dendritic spines of striatal medium spiny neurons. Neuron 2004 Oct;44(3):483-93.
9. Chiappe ME, Seelig JD, Reiser MB, Jayaraman V. Walking modulates speed sensitivity in Drosophila motion vision. Current biology : CB 2010 Aug;20(16):1470-5.
10. Miri A, Daie K, Burdine RD, Aksay E, Tank DW. Regression-based identification of behavior-encoding neurons during large-scale optical imaging of neural activity at cellular resolution. Journal of neurophysiology 2011 Feb;105(2):964-80.
11. Miri A, Daie K, Arrenberg AB, Baier H, Aksay E, Tank DW. Spatial gradients and multidimensional dynamics in a neural integrator circuit. Nature Neuroscience 2011 Aug;14(9):1150-9.
12. Harvey CD, Yasuda R, Zhong H, Svoboda K. The spread of Ras activity triggered by activation of a single dendritic spine. Science (New York, N.Y.) 2008 Jul;321(5885):136-40.
13. Mostany R, Portera-Cailliau C. A method for 2-photon imaging of blood flow in the neocortex through a cranial window. Journal of visualized experiments : JoVE 2008 Jan;(12)
14. O'Brien GS, Martin SM, Söllner C, Wright GJ, Becker CG, Portera-Cailliau C, Sagasti A. Developmentally regulated impediments to skin reinnervation by injured peripheral sensory axon terminals. Current biology : CB 2009 Dec;19(24):2086-90.
15. Christie JM, Chiu DN, Jahr CE. Ca(2+)-dependent enhancement of release by subthreshold somatic depolarization. Nature neuroscience 2011 Jan;14(1):62-8.
16. Acker CD, Yan P, Loew LM. Single-voxel recording of voltage transients in dendritic spines. Biophysical journal 2011 Jul;101(2):L11-3.
17. Zhang Y-P, Oertner TG. Optical induction of synaptic plasticity using a light-sensitive channel. Nature methods 2007 Feb;4(2):139-41.
18. Zhang Y-P, Holbro N, Oertner TG. Optical induction of plasticity at single synapses reveals input-specific accumulation of alphaCaMKII. Proceedings of the National Academy of Sciences of the United States of America 2008 Aug;105(33):12039-44.
19. Berndt A, Schoenenberger P, Mattis J, Tye KM, Deisseroth K, Hegemann P, Oertner TG. High-efficiency channelrhodopsins for fast neuronal stimulation at low light levels. Proceedings of the National Academy of Sciences of the United States of America 2011 May;108(18):7595-600.
20. Guetg N, Abdel Aziz S, Holbro N, Turecek R, Rose T, Seddik R, Gassmann M, Moes S, Jenoe P, Oertner TG, Casanova E, Bettler B. NMDA receptor-dependent GABAB receptor internalization via CaMKII phosphorylation of serine 867 in GABAB1. Proceedings of the National Academy of Sciences of the United States of America 2010 Aug;107(31):13924-9.
21. O'Connor DH, Clack NG, Huber D, Komiyama T, Myers EW, Svoboda K. Vibrissa-based object localization in head-fixed mice. The Journal of neuroscience : the official journal of the Society for Neuroscience 2010 Feb;30(5):1947-67.
22. Sternson SM, Shepherd GMG, Friedman JM. Topographic mapping of VMH --> arcuate nucleus microcircuits and their reorganization by fasting. Nature neuroscience 2005 Oct;8(10):1356-63.
23. Weiler N, Wood L, Yu J, Solla SA, Shepherd GMG. Top-down laminar organization of the excitatory network in motor cortex. Nature neuroscience 2008 Mar;11(3):360-6.
24. Petreanu L, Mao T, Sternson SM, Svoboda K. The subcellular organization of neocortical excitatory connections. Nature 2009 Feb;457(7233):1142-5.
25. Oviedo HV, Bureau I, Svoboda K, Zador AM. The functional asymmetry of auditory cortex is reflected in the organization of local cortical circuits. Nature neuroscience 2010 Nov;13(11):1413-20.
26. Petrof I, Sherman SM. Synaptic properties of the mammillary and cortical afferents to the anterodorsal thalamic nucleus in the mouse. The Journal of neuroscience : the official journal of the Society for Neuroscience 2009 Jun;29(24):7815-9.
27. Viaene AN, Petrof I, Sherman SM. Synaptic Properties of Thalamic Input to the Subgranular Layers of Primary Somatosensory and Auditory Cortices in the Mouse. Journal of Neuroscience 2011 Sep;31(36):12738-12747.
28. Viaene AN, Petrof I, Sherman SM. Synaptic properties of thalamic input to layers 2/3 and 4 of primary somatosensory and auditory cortices. Journal of neurophysiology 2011 Jan;105(1):279-92.
29. Lee CC, Sherman SM. Synaptic properties of thalamic and intracortical inputs to layer 4 of the first- and higher-order cortical areas in the auditory and somatosensory systems. Journal of neurophysiology 2008 Jul;100(1):317-26.
30. De Pasquale R, Sherman SM. Synaptic Properties of Corticocortical Connections between the Primary and Secondary Visual Cortical Areas in the Mouse. Journal of Neuroscience 2011 Nov;31(46):16494-16506.
31. Wood L, Gray NW, Zhou Z, Greenberg ME, Shepherd GMG. Synaptic circuit abnormalities of motor-frontal layer 2/3 pyramidal neurons in an RNA interference model of methyl-CpG-binding protein 2 deficiency. The Journal of neuroscience : the official journal of the Society for Neuroscience 2009 Oct;29(40):12440-8.
32. Wood L, Shepherd GMG. Synaptic circuit abnormalities of motor-frontal layer 2/3 pyramidal neurons in a mutant mouse model of Rett syndrome. Neurobiology of disease 2010 May;38(2):281-7.
33. Anderson CT, Sheets PL, Kiritani T, Shepherd GMG. Sublayer-specific microcircuits of corticospinal and corticostriatal neurons in motor cortex. Nature neuroscience 2010 Jun;13(6):739-44.
34. Viaene AN, Petrof I, Sherman SM. Properties of the thalamic projection from the posterior medial nucleus to primary and secondary somatosensory cortices in the mouse. Proceedings of the National Academy of Sciences of the United States of America 2011 Oct;108(44):18156-61.
35. Bureau I, Shepherd GMG, Svoboda K. Precise development of functional and anatomical columns in the neocortex. Neuron 2004 Jun;42(5):789-801.
36. Shepherd GMG, Svoboda K. Laminar and columnar organization of ascending excitatory projections to layer 2/3 pyramidal neurons in rat barrel cortex. The Journal of neuroscience : the official journal of the Society for Neuroscience 2005 Jun;25(24):5670-9.
37. Shi Y, Nenadic Z, Xu X. Novel use of matched filtering for synaptic event detection and extraction. PloS one 2010 Jan;5(11):e15517.
38. Middleton JW, Kiritani T, Pedersen C, Turner JG, Shepherd GMG, Tzounopoulos T. Mice with behavioral evidence of tinnitus exhibit dorsal cochlear nucleus hyperactivity because of decreased GABAergic inhibition. Proceedings of the National Academy of Sciences of the United States of America 2011 May;108(18):7601-6.
39. Lam Y-W, Nelson CS, Sherman SM. Mapping of the functional interconnections between thalamic reticular neurons using photostimulation. Journal of neurophysiology 2006 Nov;96(5):2593-600.
40. Ikrar T, Olivas ND, Shi Y, Xu X. Mapping inhibitory neuronal circuits by laser scanning photostimulation. Journal of visualized experiments : JoVE 2011 Jan;(56)
41. Mao T, Kusefoglu D, Hooks BM, Huber D, Petreanu L, Svoboda K. Long-Range Neuronal Circuits Underlying the Interaction between Sensory and Motor Cortex. Neuron 2011 Oct;72(1):111-123.
42. Yu J, Anderson CT, Kiritani T, Sheets PL, Wokosin DL, Wood L, Shepherd GMG. Local-Circuit Phenotypes of Layer 5 Neurons in Motor-Frontal Cortex of YFP-H Mice. Frontiers in neural circuits 2008 Jan;2:6.
43. Hooks BM, Hires SA, Zhang Y-X, Huber D, Petreanu L, Svoboda K, Shepherd GMG. Laminar analysis of excitatory local circuits in vibrissal motor and sensory cortical areas. PLoS biology 2011 Jan;9(1):e1000572.
44. Bureau I, von Saint Paul F, Svoboda K. Interdigitated paralemniscal and lemniscal pathways in the mouse barrel cortex. PLoS biology 2006 Nov;4(12):e382.
45. Tian L, Hires SA, Mao T, Huber D, Chiappe ME, Chalasani SH, Petreanu L, Akerboom J, McKinney SA, Schreiter ER, Bargmann CI, Jayaraman V, Svoboda K, Looger LL. Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators. Nature methods 2009 Dec;6(12):875-81.
46. Xu X, Olivas ND, Levi R, Ikrar T, Nenadic Z. High precision and fast functional mapping of cortical circuitry through a novel combination of voltage sensitive dye imaging and laser scanning photostimulation. Journal of neurophysiology 2010 Apr;103(4):2301-12.
47. Lee CC, Sherman SM. Glutamatergic inhibition in sensory neocortex. Cerebral cortex (New York, N.Y. : 1991) 2009 Oct;19(10):2281-9.
48. Shepherd GMG, Stepanyants A, Bureau I, Chklovskii D, Svoboda K. Geometric and functional organization of cortical circuits. Nature neuroscience 2005 Jun;8(6):782-90.
49. Lam Y-W, Sherman SM. Functional organization of the thalamic input to the thalamic reticular nucleus. The Journal of neuroscience : the official journal of the Society for Neuroscience 2011 May;31(18):6791-9.
50. Lam Y-W, Sherman SM. Functional organization of the somatosensory cortical layer 6 feedback to the thalamus. Cerebral cortex (New York, N.Y. : 1991) 2010 Jan;20(1):13-24.
51. Zhao C, Kao JPY, Kanold PO. Functional excitatory microcircuits in neonatal cortex connect thalamus and layer 4. The Journal of neuroscience : the official journal of the Society for Neuroscience 2009 Dec;29(49):15479-88.
52. Suter B. Ephus: multipurpose data acquisition software for neuroscience experiments. Frontiers in Neural Circuits 2010 Jan;4:100.
53. Lam Y-W, Sherman SM. Different topography of the reticulothalmic inputs to first- and higher-order somatosensory thalamic relays revealed using photostimulation. Journal of neurophysiology 2007 Nov;98(5):2903-9.
54. Llano DA, Sherman SM. Differences in intrinsic properties and local network connectivity of identified layer 5 and layer 6 adult mouse auditory corticothalamic neurons support a dual corticothalamic projection hypothesis. Cerebral cortex (New York, N.Y. : 1991) 2009 Dec;19(12):2810-26.
55. Sheets PL, Suter BA, Kiritani T, Chan CS, Surmeier DJ, Shepherd GMG. Corticospinal-specific HCN expression in mouse motor cortex: I(h)-dependent synaptic integration as a candidate microcircuit mechanism involved in motor control. Journal of neurophysiology 2011 Nov;106(5):2216-31.
56. Qiu S, Anderson CT, Levitt P, Shepherd GMG. Circuit-specific intracortical hyperconnectivity in mice with deletion of the autism-associated Met receptor tyrosine kinase. The Journal of neuroscience : the official journal of the Society for Neuroscience 2011 Apr;31(15):5855-64.
57. Bureau I, Shepherd GMG, Svoboda K. Circuit and plasticity defects in the developing somatosensory cortex of FMR1 knock-out mice. The Journal of neuroscience : the official journal of the Society for Neuroscience 2008 May;28(20):5178-88.
58. Petreanu L, Huber D, Sobczyk A, Svoboda K. Channelrhodopsin-2-assisted circuit mapping of long-range callosal projections. Nature neuroscience 2007 May;10(5):663-8.
59. Rosselet C, Fieschi M, Hugues S, Bureau I. Associative learning changes the organization of functional excitatory circuits targeting the supragranular layers of mouse barrel cortex. Frontiers in neural circuits 2011 Jan;4:126.
60. Christie LA, Russell TA, Xu J, Wood L, Shepherd GMG, Contractor A. AMPA receptor desensitization mutation results in severe developmental phenotypes and early postnatal lethality. Proceedings of the National Academy of Sciences of the United States of America 2010 May;107(20):9412-7.
61. Atasoy D, Aponte Y, Su HH, Sternson SM. A FLEX switch targets Channelrhodopsin-2 to multiple cell types for imaging and long-range circuit mapping. The Journal of neuroscience : the official journal of the Society for Neuroscience 2008 Jul;28(28):7025-30.
62. Lien AD, Scanziani M. In vivo Labeling of Constellations of Functionally Identified Neurons for Targeted in vitro Recordings. Frontiers in neural circuits 2011 Jan;5:16.
63. Atallah BV, Bruns W, Carandini M, Scanziani M. Parvalbumin-Expressing Interneurons Linearly Transform Cortical Responses to Visual Stimuli. Neuron 2012 Jan;73(1):159-170.
64. Marshel JH, Garrett ME, Nauhaus I, Callaway EM. Functional Specialization of Seven Mouse Visual Cortical Areas. Neuron 2011 Dec;72(6):1040-1054.
65. Kerlin AM, Andermann ML, Berezovskii VK, Reid RC. Broadly tuned response properties of diverse inhibitory neuron subtypes in mouse visual cortex. Neuron 2010 Sep;67(5):858-71.
66. Wiechert MT, Judkewitz B, Riecke H, Friedrich RW. Mechanisms of pattern decorrelation by recurrent neuronal circuits. Nature neuroscience 2010 Aug;13(8):1003-10.
67. Blumhagen F, Zhu P, Shum J, Schärer Y-PZ, Yaksi E, Deisseroth K, Friedrich RW. Neuronal filtering of multiplexed odour representations. Nature 2011 Nov;479(7374):493-498.
68. Holbro N, Grunditz A, Wiegert JS, Oertner TG. AMPA receptors gate spine Ca(2+) transients and spike-timing-dependent potentiation. Proceedings of the National Academy of Sciences of the United States of America 2010 Sep;107(36):15975-80.
69. Pugh JR, Jahr CE. NMDA Receptor Agonists Fail To Alter Release from Cerebellar Basket Cells. Journal of Neuroscience 2011 Nov;31(46):16550-16555.
70. Woods GF, Oh WC, Boudewyn LC, Mikula SK, Zito K. Loss of PSD-95 Enrichment Is Not a Prerequisite for Spine Retraction. Journal of Neuroscience 2011 Aug;31(34):12129-12138.
71. Arttamangkul S, Lau EK, Lu H-W, Williams JT. Desensitization and Trafficking of mu-opioid Receptors in Locus Coeruleus Neurons: Modulation by Kinases. Molecular pharmacology 2011 Nov;mol.111.076208-.
72. Kitamura K, Hausser M. Dendritic Calcium Signaling Triggered by Spontaneous and Sensory-Evoked Climbing Fiber Input to Cerebellar Purkinje Cells In Vivo. Journal of Neuroscience 2011 Jul;31(30):10847-10858.
73. Andermann ML, Kerlin AM, Roumis DK, Glickfeld LL, Reid RC. Functional Specialization of Mouse Higher Visual Cortical Areas. Neuron 2011 Dec;72(6):1025-1039.
74. Peñagarikano O, Abrahams BS, Herman EI, Winden KD, Gdalyahu A, Dong H, Sonnenblick LI, Gruver R, Almajano J, Bragin A, Golshani P, Trachtenberg JT, Peles E, Geschwind DH. Absence of CNTNAP2 Leads to Epilepsy, Neuronal Migration Abnormalities, and Core Autism-Related Deficits. Cell 2011 Sep;147(1):235-246.
75. Bégin S, Burgoyne B, Mercier V, Villeneuve A, Vallée R, Côté D. Coherent anti-Stokes Raman scattering hyperspectral tissue imaging with a wavelength-swept system. Biomedical optics express 2011 Jan;2(5):1296-306.
76. Dubuis J, Morrison AH, Scheeler M, Gregor T. Quantifying the Bicoid morphogen gradient in living fly embryos. Arxiv preprint arXiv:1003.5572 2010;
77. Livnat N, Sarig-Nadir O, Zajdman R, Seliktar D, Shoham S. A Hydrogel-Based Nerve Regeneration Conduit with Sub-Micrometer Feature Control. In: 2007 3rd International IEEE/EMBS Conference on Neural Engineering. IEEE; 2007 p. 101-103.
78. Liu CC, Gao SS, Yuan T, Steele C, Puria S, Oghalai JS. Biophysical mechanisms underlying outer hair cell loss associated with a shortened tectorial membrane. Journal of the Association for Research in Otolaryngology : JARO 2011 Oct;12(5):577-94.
79. Borghuis BG, Tian L, Xu Y, Nikonov SS, Vardi N, Zemelman BV, Looger LL. Imaging light responses of targeted neuron populations in the rodent retina. The Journal of neuroscience : the official journal of the Society for Neuroscience 2011 Feb;31(8):2855-67.
80. Chia TH, Levene MJ. In vivo imaging of deep cortical layers using a microprism. Journal of visualized experiments : JoVE 2009 Jan;(30)
81. Heider B, Nathanson JL, Isacoff EY, Callaway EM, Siegel RM. Two-Photon Imaging of Calcium in Virally Transfected Striate Cortical Neurons of Behaving Monkey. PloS one 2010;5(11):e13829.
82. Pugh JR, Jahr CE. Axonal GABAA receptors increase cerebellar granule cell excitability and synaptic activity. The Journal of neuroscience : the official journal of the Society for Neuroscience 2011 Jan;31(2):565-74.
83. Ramsey AJAJ, Milenkovic M, Oliveira AFAF, Escobedo-Lozoya Y, Seshadri S, Salahpour A, Sawa A, Yasuda R, Caron MGMG. Impaired NMDA receptor transmission alters striatal synapses and DISC1 protein in an age-dependent manner. Proceedings of the National Academy of Sciences of the United States of America 2011 Apr;108(14):5795.
84. Golshani P, Portera-Cailliau C. In vivo 2-photon calcium imaging in layer 2/3 of mice. Journal of visualized experiments : JoVE 2008 Jan;(13)
85. Parra SG, Chia TH, Zinter JP, Levene MJ. Multiphoton microscopy of cleared mouse organs. Journal of biomedical optics 2010 Jan;15(3):036017.
86. Mostaço-Guidolin LB, Sowa MG, Ridsdale A, Pegoraro AF, Smith MSD, Hewko MD, Kohlenberg EK, Schattka B, Shiomi M, Stolow A, Ko AC-T. Differentiating atherosclerotic plaque burden in arterial tissues using femtosecond CARS-based multimodal nonlinear optical imaging. Biomedical optics express 2010 Jan;1(1):59-73.
87. Martin SM, O'Brien GS, Portera-Cailliau C, Sagasti A. Wallerian degeneration of zebrafish trigeminal axons in the skin is required for regeneration and developmental pruning. Development (Cambridge, England) 2010 Dec;137(23):3985-94.
88. Chowdhury TG, Jimenez JC, Bomar JM, Cruz-Martin A, Cantle JP, Portera-Cailliau C. Fate of cajal-retzius neurons in the postnatal mouse neocortex. Frontiers in neuroanatomy 2010 Jan;4:10.
89. Mostany R, Portera-Cailliau C. Absence of large-scale dendritic plasticity of layer 5 pyramidal neurons in peri-infarct cortex. The Journal of neuroscience : the official journal of the Society for Neuroscience 2011 Feb;31(5):1734-8.
90. Sato TR, Svoboda K. The functional properties of barrel cortex neurons projecting to the primary motor cortex. The Journal of neuroscience : the official journal of the Society for Neuroscience 2010 Mar;30(12):4256-60.
91. Judkewitz B, Rizzi M, Kitamura K, Häusser M. Targeted single-cell electroporation of mammalian neurons in vivo. Nature protocols 2009 Jan;4(6):862-9.
92. O'Connor DH, Peron SP, Huber D, Svoboda K. Neural activity in barrel cortex underlying vibrissa-based object localization in mice. Neuron 2010 Sep;67(6):1048-61.
93. Yu YJ, Arttamangkul S, Evans CJ, Williams JT, von Zastrow M. Neurokinin 1 receptors regulate morphine-induced endocytosis and desensitization of mu-opioid receptors in CNS neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience 2009 Jan;29(1):222-33.
94. Niessing J, Friedrich RW. Olfactory pattern classification by discrete neuronal network states. Nature 2010 May;465(7294):47-52.
95. Dombeck DA, Harvey CD, Tian L, Looger LL, Tank DW. Functional imaging of hippocampal place cells at cellular resolution during virtual navigation. Nature neuroscience 2010 Nov;13(11):1433-40.
96. Higley MJ, Sabatini BL. Competitive regulation of synaptic Ca2+ influx by D2 dopamine and A2A adenosine receptors. Nature neuroscience 2010 Aug;13(8):958-66.
97. Soler-Llavina GJ, Sabatini BL. Synapse-specific plasticity and compartmentalized signaling in cerebellar stellate cells. Nature neuroscience 2006 Jun;9(6):798-806.
98. Sjöström PJ, Häusser M. A cooperative switch determines the sign of synaptic plasticity in distal dendrites of neocortical pyramidal neurons. Neuron 2006 Jul;51(2):227-38.
99. Zito K, Knott G, Shepherd GMG, Shenolikar S, Svoboda K. Induction of spine growth and synapse formation by regulation of the spine actin cytoskeleton. Neuron 2004 Oct;44(2):321-34.
100. Ngo-Anh TJ, Bloodgood BL, Lin M, Sabatini BL, Maylie J, Adelman JP. SK channels and NMDA receptors form a Ca2+-mediated feedback loop in dendritic spines. Nature neuroscience 2005 May;8(5):642-9.
101. Holtmaat A, Wilbrecht L, Knott GW, Welker E, Svoboda K. Experience-dependent and cell-type-specific spine growth in the neocortex. Nature 2006 Jun;441(7096):979-83.
102. Svoboda K, Yasuda R. Principles of two-photon excitation microscopy and its applications to neuroscience. Neuron 2006 Jun;50(6):823-39.
103. Holtmaat AJGD, Trachtenberg JT, Wilbrecht L, Shepherd GM, Zhang X, Knott GW, Svoboda K. Transient and persistent dendritic spines in the neocortex in vivo. Neuron 2005 Jan;45(2):279-91.
104. Ohki K, Chung S, Ch'ng YH, Kara P, Reid RC. Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex. Nature 2005 Feb;433(7026):597-603.
105. Helmchen F, Denk W. Deep tissue two-photon microscopy. Nature methods 2005 Dec;2(12):932-40.
106. Bullen A. Two-photon imaging of the immune system: a custom technology platform for high-speed, multicolor tissue imaging of immune responses. Visualizing Immunity 2009;
107. Seelig J, Chiappe M, Lott G. Two-photon calcium imaging from head-fixed Drosophila during optomotor walking behavior. Nature methods 2010;
108. O'Brien G, Rieger S. Two-photon axotomy and time-lapse confocal imaging in live zebrafish embryos. Journal of Visualized ... 2009;
109. Carter AG, Soler-Llavina GJ, Sabatini BL. Timing and location of synaptic inputs determine modes of subthreshold integration in striatal medium spiny neurons. The Journal of Neuroscience 2007;27(33):8967.
110. Nimchinsky EA, Yasuda R, Oertner TG, Svoboda K. The number of glutamate receptors opened by synaptic stimulation in single hippocampal spines. The Journal of neuroscience 2004;24(8):2054.
111. Sato TR, Gray NW, Mainen ZF, Svoboda K. The functional microarchitecture of the mouse barrel cortex. PLoS biology 2007;5(7):e189.
112. Schoenenberger P, Gerosa D, Oertner TG. Temporal control of immediate early gene induction by light. PLoS One 2009;4(12):e8185.
113. Ding JB, Takasaki KT, Sabatini BL. Supraresolution imaging in brain slices using stimulated-emission depletion two-photon laser scanning microscopy. Neuron 2009;63(4):429-437.
114. Yasuda R, Harvey CD, Zhong H, Sobczyk A, Van Aelst L, Svoboda K. Supersensitive Ras activation in dendrites and spines revealed by two-photon fluorescence lifetime imaging. Nature neuroscience 2006;9(2):283-291.
115. Zhong H, Sia GM, Sato TR, Gray NW, Mao T, Khuchua Z, Huganir RL, Svoboda K. Subcellular dynamics of type II PKA in neurons. Neuron 2009;62(3):363-374.
116. Wilbrecht L, Holtmaat A. Structural plasticity underlies experience-dependent functional plasticity of cortical circuits. The Journal of ... 2010;
117. Wang Y, Guo HF, Pologruto TA, Hannan F, Hakker I, Svoboda K, Zhong Y. Stereotyped odor-evoked activity in the mushroom body of Drosophila revealed by green fluorescent protein-based Ca2+ imaging. The Journal of neuroscience 2004;24(29):6507.
118. Grunditz Å, Holbro N, Tian L, Zuo Y, Oertner TG. Spine neck plasticity controls postsynaptic calcium signals through electrical compartmentalization. The Journal of Neuroscience 2008;28(50):13457.
119. Major G, Polsky A. Spatiotemporally graded NMDA spike/plateau potentials in basal dendrites of neocortical pyramidal neurons. Journal of ... 2008;
120. Schultz S, Kitamura K. Spatial pattern coding of sensory information by climbing fiber-evoked calcium signals in networks of neighboring cerebellar Purkinje cells. The Journal of ... 2009;
121. Huber D, Petreanu L, Ghitani N, Ranade S, Hromádka T, Mainen Z, Svoboda K. Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving mice. Nature 2007;451(7174):61-64.
122. Arttamangkul S, Torrecilla M, Kobayashi K, Okano H, Williams JT. Separation of $\mu$-Opioid Receptor Desensitization and Internalization: Endogenous Receptors in Primary Neuronal Cultures. The Journal of neuroscience 2006;26(15):4118.
123. Christie JM, Jahr CE. Selective expression of ligand-gated ion channels in L5 pyramidal cell axons. The Journal of Neuroscience 2009;29(37):11441.
124. Birbach A. Reversible, activity-dependent targeting of profilin to neuronal nuclei. Experimental cell research 2006;
125. Simons S. Regional differences in hippocampal calcium handling provide a cellular mechanism for limiting plasticity. Proceedings of the ... 2009;
126. Gray NW, Weimer RM, Bureau I, Svoboda K. Rapid redistribution of synaptic PSD-95 in the neocortex in vivo. PLoS Biology 2006;4(11):e370.
127. Zito K, Scheuss V, Knott G, Hill T, Svoboda K. Rapid functional maturation of nascent dendritic spines. Neuron 2009;61(2):247-258.
128. Hoogland TM, Kuhn B, Göbel W, Huang W, Nakai J, Helmchen F, Flint J, Wang SSH. Radially expanding transglial calcium waves in the intact cerebellum. Proceedings of the National Academy of Sciences 2009;106(9):3496.
129. Gregor T, Tank DW, Wieschaus EF, Bialek W. Probing the limits to positional information. Cell 2007;130(1):153-164.
130. Oheim M, Michael DJ, Geisbauer M, Madsen D, Chow RH. Principles of two-photon excitation fluorescence microscopy and other nonlinear imaging approaches. Advanced drug delivery reviews 2006;58(7):788-808.
131. Hillman EMC. Optical brain imaging in vivo: techniques and applications from animal to man. Journal of biomedical optics 2007;12:051402.
132. Scheuss V, Yasuda R, Sobczyk A, Svoboda K. Nonlinear [Ca2+] signaling in dendrites and spines caused by activity-dependent depression of Ca2+ extrusion. The Journal of neuroscience 2006;26(31):8183.
133. Sobczyk A, Scheuss V, Svoboda K. NMDA receptor subunit-dependent [Ca2+] signaling in individual hippocampal dendritic spines. The Journal of neuroscience 2005;25(26):6037.
134. Ko A, Ridsdale A. Multimodal nonlinear optical imaging of atherosclerotic plaque development in myocardial infarction-prone rabbits. Journal of Biomedical ... 2010;
135. Pologruto TA, Yasuda R, Svoboda K. Monitoring neural activity and [Ca2+] with genetically encoded Ca2+ indicators. The Journal of neuroscience 2004;24(43):9572.
136. Chia T, Levene M. Microprisms for in vivo multilayer cortical imaging. Journal of neurophysiology 2009;
137. Bigelow A. Microbeam-integrated multiphoton imaging system. Review of Scientific ... 2008;
138. Egger V, Svoboda K, Mainen ZFZF. Mechanisms of Lateral Inhibition in the Olfactory Bulb: Efficiency and Modulation of Spike-Evoked Calcium Influx into Granule Cells. The Journal of neuroscience 2003;23(20):7551-7558.
139. Holtmaat A, Bonhoeffer T, Chow DK, Chuckowree J, De Paola V, Hofer SB, Hübener M, Keck T, Knott G, Lee WCA, others. Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window. Nature protocols 2009;4(8):1128-1144.
140. Heneka M, Nadrigny F. Locus ceruleus controls Alzheimer's disease pathology by modulating microglial functions through norepinephrine. Proceedings of the ... 2010;
141. Harvey CD, Svoboda K. Locally dynamic synaptic learning rules in pyramidal neuron dendrites. Nature 2007;450(7173):1195-1200.
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