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Snapshot: 2013-11-08
Current total primary research publications: 301

1. Hashizume M, Miyazaki T, Sakimura K, Watanabe M, Kitamura K, Kano M. Disruption of cerebellar microzonal organization in GluD2 (GluRδ2) knockout mouse. Front. Neural Circuits. 2013;7:130.

2. Kato HK, Gillet SN, Peters AJ, Isaacson JS, Komiyama T. Parvalbumin-expressing Interneurons Underlie a Local Inhibitory Circuit Regulating the Gain of Olfactory Bulb Output. Neuron. 2013. In press.

3. Dehez H, Piché M, De Koninck Y. Resolution and contrast enhancement in laser scanning microscopy using dark beam imaging. Opt. Express. 2013;21(13):15912–25.

4. Fajardo O, Zhu P, Friedrich RW. Control of a specific motor program by a small brain area in zebrafish. Front. Neural Circuits. 2013;7:67.

5. Hinz C, Namekawa R, Behrmann-Godel J, Oppelt C, Jaeschke A, Müller A, Friedrich RW, Gerlach G. Olfactory imprinting is triggered by MHC peptide ligands. Sci. Rep. 2013;3:2800.

6. Yang W, Carrasquillo Y, Hooks BM, Nerbonne JM, Burkhalter A. Distinct balance of excitation and inhibition in an interareal feedforward and feedback circuit of mouse visual cortex. J. Neurosci. 2013;33(44):17373–84.

7. Yasvoina M V, Genç B, Jara JH, Sheets PL, Quinlan KA, Milosevic A, Shepherd GMG, Heckman CJ, Özdinler PH. eGFP expression under UCHL1 promoter genetically labels corticospinal motor neurons and a subpopulation of degeneration-resistant spinal motor neurons in an ALS mouse model. J. Neurosci. 2013;33(18):7890–904.

8. Schie IW, Nolte L, Pedersen TL, Smith Z, Wu J, Yahiatène I, Newman JW, Huser T. Direct comparison of fatty acid ratios in single cellular lipid droplets as determined by comparative Raman spectroscopy and gas chromatography. Analyst. 2013;138(21):6662–70.

9. Liu F, Morrison AH, Gregor T. Dynamic interpretation of maternal inputs by the Drosophila segmentation gene network. Proc. Natl. Acad. Sci. U. S. A. 2013;110(17):6724–9.

10. Sun XR, Badura A, Pacheco DA, Lynch LA, Schneider ER, Taylor MP, Hogue IB, Enquist LW, Murthy M, Wang SS-H. Fast GCaMPs for improved tracking of neuronal activity. Nat. Commun. 2013;4:2170.

11. Garcia-Junco-Clemente P, Chow DK, Tring E, Lazaro MT, Trachtenberg JT, Golshani P. Overexpression of calcium-activated potassium channels underlies cortical dysfunction in a model of PTEN-associated autism. Proc. Natl. Acad. Sci. U. S. A. 2013;110(45):18297–302.

12. Seelig JD, Jayaraman V. Feature detection and orientation tuning in the Drosophila central complex. Nature. 2013.

13. Kress GJ, Yamawaki N, Wokosin DL, Wickersham IR, Shepherd GMG, Surmeier DJ. Convergent cortical innervation of striatal projection neurons. Nat. Neurosci. 2013;16(6):665–7.

14. Wardill TJ, Chen T-W, Schreiter ER, Hasseman JP, Tsegaye G, Fosque BF, Behnam R, Shields BC, Ramirez M, Kimmel BE, Kerr RA, Jayaraman V, Looger LL, Svoboda K, Kim DS. A neuron-based screening platform for optimizing genetically-encoded calcium indicators. PLoS One. 2013;8(10):e77728.

15. Zhu P, Frank T, Friedrich RW. Equalization of odor representations by a network of electrically coupled inhibitory interneurons. Nat. Neurosci. 2013;16(11):1678–86.

16. O’Connor DH, Hires SA, Guo Z V, Li N, Yu J, Sun Q-Q, Huber D, Svoboda K. Neural coding during active somatosensation revealed using illusory touch. Nat. Neurosci. 2013;16(7):958–65.

17. Andermann ML, Gilfoy NB, Goldey GJ, Sachdev RNS, Wölfel M, McCormick DA, Reid RC, Levene MJ. Chronic Cellular Imaging of Entire Cortical Columns in Awake Mice Using Microprisms. Neuron. 2013.

18. Nahir B, Jahr CE. Activation of Extrasynaptic NMDARs at Individual Parallel Fiber-Molecular Layer Interneuron Synapses in Cerebellum. J. Neurosci. 2013;33(41):16323–33.

19. Smith SL, Smith IT, Branco T, Häusser M. Dendritic spikes enhance stimulus selectivity in cortical neurons in vivo. Nature. 2013.

20. Scott BB, Brody CD, Tank DW. Cellular resolution functional imaging in behaving rats using voluntary head restraint. Neuron. 2013;80(2):371–84.

21. Wilson NR, Schummers J, Runyan CA, Yan SX, Chen RE, Deng Y, Sur M. Two-way communication with neural networks in vivo using focused light. Nat. Protoc. 2013;8(6):1184–203.

22. Holcomb PS, Hoffpauir BK, Hoyson MC, Jackson DR, Deerinck TJ, Marrs GS, Dehoff M, Wu J, Ellisman MH, Spirou GA. Synaptic Inputs Compete during Rapid Formation of the Calyx of Held: A New Model System for Neural Development. J. Neurosci. 2013;33(32):12954–12969.

23. Maisak MS, Haag J, Ammer G, Serbe E, Meier M, Leonhardt A, Schilling T, Bahl A, Rubin GM, Nern A, Dickson BJ, Reiff DF, Hopp E, Borst A. A directional tuning map of Drosophila elementary motion detectors. Nature. 2013;500(7461):212–216.

24. Polack P-O, Friedman J, Golshani P. Cellular mechanisms of brain state-dependent gain modulation in visual cortex. Nat. Neurosci. 2013;16(9):1331–9.

25. Kuhlman SJ, Olivas ND, Tring E, Ikrar T, Xu X, Trachtenberg JT. A disinhibitory microcircuit initiates critical-period plasticity in the visual cortex. Nature. 2013.

26. Granstedt AE, Bosse JB, Thiberge SY, Enquist LW. In vivo imaging of alphaherpesvirus infection reveals synchronized activity dependent on axonal sorting of viral proteins. Proc. Natl. Acad. Sci. U. S. A. 2013.

27. Lien AD, Scanziani M. Tuned thalamic excitation is amplified by visual cortical circuits. Nat. Neurosci. 2013.

28. Li Y, Ibrahim LA, Liu B, Zhang LI, Tao HW. Linear transformation of thalamocortical input by intracortical excitation. Nat. Neurosci. 2013.

29. Borghuis BG, Marvin JS, Looger LL, Demb JB. Two-Photon Imaging of Nonlinear Glutamate Release Dynamics at Bipolar Cell Synapses in the Mouse Retina. J. Neurosci. 2013;33(27):10972–10985.

30. Esposti F, Johnston J, Rosa JM, Leung K-M, Lagnado L. Olfactory Stimulation Selectively Modulates the OFF Pathway in the Retina of Zebrafish. Neuron. 2013;79(1):97–110.

31. Gonçalves JT, Anstey JE, Golshani P, Portera-Cailliau C. Circuit level defects in the developing neocortex of Fragile X mice. Nat. Neurosci. 2013;16(7):903–9.

32. Chen T-W, Wardill TJ, Sun Y, Pulver SR, Renninger SL, Baohan A, Schreiter ER, Kerr RA, Orger MB, Jayaraman V, Looger LL, Svoboda K, Kim DS. Ultrasensitive fluorescent proteins for imaging neuronal activity. Nature. 2013;499(7458):295–300.

33. Maco B, Holtmaat A, Cantoni M, Kreshuk A, Straehle CN, Hamprecht FA, Knott GW. Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons. PLoS One. 2013;8(2):e57405.

34. Schubert V, Lebrecht D, Holtmaat A. Peripheral Deafferentation-Driven Functional Somatosensory Map Shifts Are Associated with Local, Not Large-Scale Dendritic Structural Plasticity. J. Neurosci. 2013;33(22):9474–9487.

35. Thériault G, De Koninck Y, McCarthy N. Extended depth of field microscopy for rapid volumetric two-photon imaging. Opt. Express. 2013;21(8):10095–104.

36. Acker CD, Loew LM. Characterization of voltage-sensitive dyes in living cells using two-photon excitation. Methods Mol. Biol. 2013;995:147–60.

37. Szatmari EM, Oliveira AF, Sumner EJ, Yasuda R. Centaurin- 1-Ras-Elk-1 Signaling at Mitochondria Mediates  -Amyloid-Induced Synaptic Dysfunction. J. Neurosci. 2013;33(12):5367–5374.

38. Bock R, Shin JH, Kaplan AR, Dobi A, Markey E, Kramer PF, Gremel CM, Christensen CH, Adrover MF, Alvarez VA. Strengthening the accumbal indirect pathway promotes resilience to compulsive cocaine use. Nat. Neurosci. 2013.

39. Rose T, Schoenenberger P, Jezek K, Oertner TG. Developmental Refinement of Vesicle Cycling at Schaffer Collateral Synapses. Neuron. 2013;77(6):1109–1121.

40. Wachowiak M, Economo MN, Diaz-Quesada M, Brunert D, Wesson DW, White JA, Rothermel M. Optical Dissection of Odor Information Processing In Vivo Using GCaMPs Expressed in Specified Cell Types of the Olfactory Bulb. J. Neurosci. 2013;33(12):5285–5300.

41. Hooks BM, Mao T, Gutnisky DA, Yamawaki N, Svoboda K, Shepherd GMG. Organization of cortical and thalamic input to pyramidal neurons in mouse motor cortex. J. Neurosci. 2013;33(2):748–60.

42. Hill TC, Zito K. LTP-induced long-term stabilization of individual nascent dendritic spines. J. Neurosci. 2013;33(2):678–86.

43. Oliveira AF, Yasuda R. An Improved Ras Sensor for Highly Sensitive and Quantitative FRET-FLIM Imaging. PLoS One. 2013;8(1):e52874.

44. Takasaki KT, Ding JB, Sabatini BL. Live-Cell Superresolution Imaging by Pulsed STED Two-Photon Excitation Microscopy. Biophys. J. 2013;104(4):770–7.

45. Robles E, Filosa A, Baier H. Precise Lamination of Retinal Axons Generates Multiple Parallel Input Pathways in the Tectum. J. Neurosci. 2013;33(11):5027–5039.

46. Oh WC, Hill TC, Zito K. Synapse-specific and size-dependent mechanisms of spine structural plasticity accompanying synaptic weakening. Proc. Natl. Acad. Sci. 2013;110(4):E305–12.


48. Horton NG, Wang K, Kobat D, Clark CG, Wise FW, Schaffer CB, Xu C. In vivo three-photon microscopy of subcortical structures within an intact mouse brain. Nat. Photonics. 2013;7(3):205–209.

49. Mostany R, Anstey JE, Crump KL, Maco B, Knott G, Portera-Cailliau C. Altered Synaptic Dynamics during Normal Brain Aging. J. Neurosci. 2013;33(9):4094–4104.

50. Beier KT, Borghuis BG, El-Danaf RN, Huberman AD, Demb JB, Cepko CL. Transsynaptic tracing with vesicular stomatitis virus reveals novel retinal circuitry. J. Neurosci. 2013;33(1):35–51.

51. Marvin JS, Borghuis BG, Tian L, Cichon J, Harnett MT, Akerboom J, Gordus A, Renninger SL, Chen T-W, Bargmann CI, Orger MB, Schreiter ER, Demb JB, Gan W-B, Hires SA, Looger LL. An optimized fluorescent probe for visualizing glutamate neurotransmission. Nat. Methods. 2013;10(2):162–70.

52. Hamilton AM, Oh WC, Vega-Ramirez H, Stein IS, Hell JW, Patrick GN, Zito K. Activity-dependent growth of new dendritic spines is regulated by the proteasome. Neuron. 2012;74(6):1023–30.

53. Gambino F, Holtmaat A. Spike-timing-dependent potentiation of sensory surround in the somatosensory cortex is facilitated by deprivation-mediated disinhibition. Neuron. 2012;75(3):490–502.

54. Parra SG, Vesuna SS, Murray TA, Levene MJ. Multiphoton microscopy of cleared mouse brain expressing YFP. J. Vis. Exp. 2012;(67):e3848.

55. Murray TA, Levene MJ. Singlet gradient index lens for deep in vivo multiphoton microscopy. J. Biomed. Opt. 2012;17(2):021106.

56. Buchanan KA, Blackman A V, Moreau AW, Elgar D, Costa RP, Lalanne T, Tudor Jones AA, Oyrer J, Sjöström PJ. Target-specific expression of presynaptic NMDA receptors in neocortical microcircuits. Neuron. 2012;75(3):451–66.

57. Gelbart MA, He B, Martin AC, Thiberge SY, Wieschaus EF, Kaschube M. Volume conservation principle involved in cell lengthening and nucleus movement during tissue morphogenesis. Proc. Natl. Acad. Sci. 2012;109(47):19298–303.

58. Nauhaus I, Nielsen KJ, Disney AA, Callaway EM. Orthogonal micro-organization of orientation and spatial frequency in primate primary visual cortex. Nat. Neurosci. 2012;15(12):1683–90.

59. Farrar MJ, Bernstein IM, Schlafer DH, Cleland TA, Fetcho JR, Schaffer CB. Chronic in vivo imaging in the mouse spinal cord using an implanted chamber. Nat. Methods. 2012;9(3):297–302.

60. Marshel JH, Kaye AP, Nauhaus I, Callaway EM. Anterior-posterior direction opponency in the superficial mouse lateral geniculate nucleus. Neuron. 2012;76(4):713–20.

61. Kwan AC, Dan Y. Dissection of cortical microcircuits by single-neuron stimulation in vivo. Curr. Biol. 2012;22(16):1459–67.

62. Lim H, Danias J. Label-free morphometry of retinal nerve fiber bundles by second-harmonic-generation microscopy. Opt. Lett. 2012;37(12):2316–8.

63. Lim H, Danias J. Effect of axonal micro-tubules on the morphology of retinal nerve fibers studied by second-harmonic generation. J. Biomed. Opt. 2012;17(11):110502.

64. Adesnik H, Bruns W, Taniguchi H, Huang ZJ, Scanziani M. A neural circuit for spatial summation in visual cortex. Nature. 2012;490(7419):226–31.

65. Zhu P, Fajardo O, Shum J, Zhang Schärer Y-P, Friedrich RW. High-resolution optical control of spatiotemporal neuronal activity patterns in zebrafish using a digital micromirror device. Nat. Protoc. 2012;7(7):1410–25.

66. Cruz-Martín A, Crespo M, Portera-Cailliau C. Glutamate induces the elongation of early dendritic protrusions via mGluRs in wild type mice, but not in fragile X mice. PLoS One. 2012;7(2):e32446.

67. Schärer Y-PZ, Shum J, Moressis A, Friedrich RW. Dopaminergic modulation of synaptic transmission and neuronal activity patterns in the zebrafish homolog of olfactory cortex. Front. Neural Circuits. 2012;6:76.

68. Marra V, Burden JJ, Thorpe JR, Smith IT, Smith SL, Häusser M, Branco T, Staras K. A preferentially segregated recycling vesicle pool of limited size supports neurotransmission in native central synapses. Neuron. 2012;76(3):579–89.

69. Bundschuh ST, Zhu P, Schärer Y-PZ, Friedrich RW. Dopaminergic modulation of mitral cells and odor responses in the zebrafish olfactory bulb. J. Neurosci. 2012;32(20):6830–40.

70. Wyatt RM, Tring E, Trachtenberg JT. Pattern and not magnitude of neural activity determines dendritic spine stability in awake mice. Nat. Neurosci. 2012;15(7):949–51.

71. Paukert M, Bergles DE. Reduction of motion artifacts during in vivo two-photon imaging of brain through heartbeat triggered scanning. J. Physiol. 2012;590(Pt 13):2955–63.

72. Gdalyahu A, Tring E, Polack P-O, Gruver R, Golshani P, Fanselow MS, Silva AJ, Trachtenberg JT. Associative fear learning enhances sparse network coding in primary sensory cortex. Neuron. 2012;75(1):121–32.

73. Tritsch NX, Ding JB, Sabatini BL. Dopaminergic neurons inhibit striatal output through non-canonical release of GABA. Nature. 2012;490(7419):262–6.

74. Drocco JA, Wieschaus EF, Tank DW. The synthesis-diffusion-degradation model explains Bicoid gradient formation in unfertilized eggs. Phys. Biol. 2012;9(5):055004.

75. Harvey CD, Coen P, Tank DW. Choice-specific sequences in parietal cortex during a virtual-navigation decision task. Nature. 2012;484(7392):62–8.

76. Ozden I, Dombeck DA, Hoogland TM, Tank DW, Wang SS-H. Widespread state-dependent shifts in cerebellar activity in locomoting mice. PLoS One. 2012;7(8):e42650.

77. Rivera DR, Brown CM, Ouzounov DG, Webb WW, Xu C. Use of a lensed fiber for a large-field-of-view, high-resolution, fiber-scanning microendoscope. Opt. Lett. 2012;37(5):881–3.

78. Rivera DR, Brown CM, Ouzounov DG, Webb WW, Xu C. Multifocal multiphoton endoscope. Opt. Lett. 2012;37(8):1349–51.

79. Brown CM, Rivera DR, Pavlova I, Ouzounov DG, Williams WO, Mohanan S, Webb WW, Xu C. In vivo imaging of unstained tissues using a compact and flexible multiphoton microendoscope. J. Biomed. Opt. 2012;17(4):040505.

80. Kato HK, Chu MW, Isaacson JS, Komiyama T. Dynamic sensory representations in the olfactory bulb: modulation by wakefulness and experience. Neuron. 2012;76(5):962–75.

81. Johnston DG, Denizet M, Mostany R, Portera-Cailliau C. Chronic In Vivo Imaging Shows No Evidence of Dendritic Plasticity or Functional Remapping in the Contralesional Cortex after Stroke. Cereb. Cortex. 2012.

82. Xu N, Harnett MT, Williams SR, Huber D, O’Connor DH, Svoboda K, Magee JC. Nonlinear dendritic integration of sensory and motor input during an active sensing task. Nature. 2012;492(7428):247–51.

83. Akerboom J, Chen T-W, Wardill TJ, Tian L, Marvin JS, Mutlu S, Calderón NC, Esposti F, Borghuis BG, Sun XR, Gordus A, Orger MB, Portugues R, Engert F, Macklin JJ, Filosa A, Aggarwal A, Kerr RA, Takagi R, Kracun S, Shigetomi E, Khakh BS, Baier H, Lagnado L, Wang SS-H, Bargmann CI, Kimmel BE, Jayaraman V, Svoboda K, Kim DS, Schreiter ER, Looger LL. Optimization of a GCaMP calcium indicator for neural activity imaging. J. Neurosci. 2012;32(40):13819–40.

84. Apicella AJ, Wickersham IR, Seung HS, Shepherd GMG. Laminarly orthogonal excitation of fast-spiking and low-threshold-spiking interneurons in mouse motor cortex. J. Neurosci. 2012;32(20):7021–33.

85. Kiritani T, Wickersham IR, Seung HS, Shepherd GMG. Hierarchical connectivity and connection-specific dynamics in the corticospinal-corticostriatal microcircuit in mouse motor cortex. J. Neurosci. 2012;32(14):4992–5001.

86. Suter BA, Migliore M, Shepherd GMG. Intrinsic Electrophysiology of Mouse Corticospinal Neurons: a Class-Specific Triad of Spike-Related Properties. Cereb. Cortex. 2012.

87. Packer AM, Peterka DS, Hirtz JJ, Prakash R, Deisseroth K, Yuste R. Two-photon optogenetics of dendritic spines and neural circuits. Nat. Methods. 2012;9(12):1202–5.

88. Petreanu L, Gutnisky DA, Huber D, Xu N, O’Connor DH, Tian L, Looger L, Svoboda K. Activity in motor-sensory projections reveals distributed coding in somatosensation. Nature. 2012;489(7415):299–303.

89. Seemann KM, Kiefersauer R, Jacob U, Kuhn B. Optical pH detection within a protein crystal. J. Phys. Chem. B. 2012;116(33):9873–81.

90. Kuhn B, Ozden I, Lampi Y, Hasan MT, Wang SS-H. An amplified promoter system for targeted expression of calcium indicator proteins in the cerebellar cortex. Front. Neural Circuits. 2012;6:49.

91. Wilson NR, Runyan CA, Wang FL, Sur M. Division and subtraction by distinct cortical inhibitory networks in vivo. Nature. 2012;488(7411):343–8.

92. Li Y, Lu H, Cheng P, Ge S, Xu H, Shi S-H, Dan Y. Clonally related visual cortical neurons show similar stimulus feature selectivity. Nature. 2012;486(7401):118–21.

93. Li Y-T, Ma W-P, Pan C-J, Zhang LI, Tao HW. Broadening of Cortical Inhibition Mediates Developmental Sharpening of Orientation Selectivity. J. Neurosci. 2012;32(12):3981–3991.

94. Ertürk A, Mauch CP, Hellal F, Förstner F, Keck T, Becker K, Jährling N, Steffens H, Richter M, Hübener M, Kramer E, Kirchhoff F, Dodt HU, Bradke F. Three-dimensional imaging of the unsectioned adult spinal cord to assess axon regeneration and glial responses after injury. Nat. Med. 2012;18(1):166–71.

95. Huber D, Gutnisky DA, Peron S, O’Connor DH, Wiegert JS, Tian L, Oertner TG, Looger LL, Svoboda K. Multiple dynamic representations in the motor cortex during sensorimotor learning. Nature. 2012;484(7395):473–478.

96. Zariwala HA, Borghuis BG, Hoogland TM, Madisen L, Tian L, De Zeeuw CI, Zeng H, Looger LL, Svoboda K, Chen T-W. A Cre-Dependent GCaMP3 Reporter Mouse for Neuronal Imaging In Vivo. J. Neurosci. 2012;32(9):3131–3141.

97. Jacob V, Petreanu L, Wright N, Svoboda K, Fox K. Regular spiking and intrinsic bursting pyramidal cells show orthogonal forms of experience-dependent plasticity in layer v of barrel cortex. Neuron. 2012;73(2):391–404.

98. Odermatt B, Nikolaev A, Lagnado L. Encoding of Luminance and Contrast by Linear and Nonlinear Synapses in the Retina. Neuron. 2012;73(4):758–773.

99. Arttamangkul S, Lau EK, Lu H-W, Williams JT. Desensitization and Trafficking of mu-opioid Receptors in Locus Coeruleus Neurons: Modulation by Kinases. Mol. Pharmacol. 2012;81(3):348–55.

100. Nauhaus I, Nielsen KJ, Callaway EM. Nonlinearity of two-photon Ca2+ imaging yields distorted measurements of tuning for V1 neuronal populations. J. Neurophysiol. 2012;107(3):923–36.

101. Scott BB, Gardner T, Ji N, Fee MS, Lois C. Wandering Neuronal Migration in the Postnatal Vertebrate Forebrain. J. Neurosci. 2012;32(4):1436–1446.

102. Viswanathan S, Bandyopadhyay S, Kao JPY, Kanold PO. Changing Microcircuits in the Subplate of the Developing Cortex. J. Neurosci. 2012;32(5):1589–1601.

103. Xiong Q, Oviedo H V., Trotman LC, Zador AM. PTEN Regulation of Local and Long-Range Connections in Mouse Auditory Cortex. J. Neurosci. 2012;32(5):1643–1652.

104. Atallah BV V., Bruns W, Carandini M, Scanziani M. Parvalbumin-Expressing Interneurons Linearly Transform Cortical Responses to Visual Stimuli. Neuron. 2012;73(1):159–170.

105. Gatesman Ammer A, Hayes KE, Martin KH, Zhang L, Spirou GA, Weed SA. Multi-photon imaging of tumor cell invasion in an orthotopic mouse model of oral squamous cell carcinoma. J. Vis. Exp. 2011;(53).

106. Farrar MJ, Wise FW, Fetcho JR, Schaffer CB. In vivo imaging of myelin in the vertebrate central nervous system using third harmonic generation microscopy. Biophys. J. 2011;100(5):1362–71.

107. Stierl M, Stumpf P, Udwari D, Gueta R, Hagedorn R, Losi A, Gärtner W, Petereit L, Efetova M, Schwarzel M, Oertner TG, Nagel G, Hegemann P. Light modulation of cellular cAMP by a small bacterial photoactivated adenylyl cyclase, bPAC, of the soil bacterium Beggiatoa. J. Biol. Chem. 2011;286(2):1181–8.

108. Truong T V, Supatto W, Koos DS, Choi JM, Fraser SE. Deep and fast live imaging with two-photon scanned light-sheet microscopy. Nat. Methods. 2011;8(9):757–60.

109. Chalifoux JR, Carter AG. GABAB receptor modulation of voltage-sensitive calcium channels in spines and dendrites. J. Neurosci. 2011;31(11):4221–32.

110. Quillinan N, Lau EK, Virk M, von Zastrow M, Williams JT. Recovery from mu-opioid receptor desensitization after chronic treatment with morphine and methadone. J. Neurosci. 2011;31(12):4434–43.

111. Sedlacek M, Tipton PW, Brenowitz SD. Sustained firing of cartwheel cells in the dorsal cochlear nucleus evokes endocannabinoid release and retrograde suppression of parallel fiber synapses. J. Neurosci. 2011;31(44):15807–17.

112. Lewis TL, Mao T, Arnold DB. A role for myosin VI in the localization of axonal proteins. PLoS Biol. 2011;9(3):e1001021.

113. Hamad MIK, Ma-Högemeier Z-L, Riedel C, Conrads C, Veitinger T, Habijan T, Schulz J-N, Krause M, Wirth MJ, Hollmann M, Wahle P. Cell class-specific regulation of neocortical dendrite and spine growth by AMPA receptor splice and editing variants. Development. 2011;138(19):4301–13.

114. Herzog E, Nadrigny F, Silm K, Biesemann C, Helling I, Bersot T, Steffens H, Schwartzmann R, Nagerl U V., El Mestikawy S, Rhee J, Kirchhoff F, Brose N. In Vivo Imaging of Intersynaptic Vesicle Exchange Using VGLUT1Venus Knock-In Mice. J. Neurosci. 2011;31(43):15544–15559.

115. Vesuna S, Torres R, Levene MJ. Multiphoton fluorescence, second harmonic generation, and fluorescence lifetime imaging of whole cleared mouse organs. J. Biomed. Opt. 2011;16(10):106009.

116. Herman MA, Nahir B, Jahr CE. Distribution of extracellular glutamate in the neuropil of hippocampus. PLoS One. 2011;6(11):e26501.

117. Bock DD, Lee W-CA, Kerlin AM, Andermann ML, Hood G, Wetzel AW, Yurgenson S, Soucy ER, Kim HS, Reid RC. Network anatomy and in vivo physiology of visual cortical neurons. Nature. 2011;471(7337):177–82.

118. Mellios N, Sugihara H, Castro J, Banerjee A, Le C, Kumar A, Crawford B, Strathmann J, Tropea D, Levine SS, Edbauer D, Sur M. miR-132, an experience-dependent microRNA, is essential for visual cortex plasticity. Nat. Neurosci. 2011;14(10):1240–2.

119. Mostaço-Guidolin LB, Ko AC-T, Popescu DP, Smith MSD, Kohlenberg EK, Shiomi M, Major A, Sowa MG. Evaluation of texture parameters for the quantitative description of multimodal nonlinear optical images from atherosclerotic rabbit arteries. Phys. Med. Biol. 2011;56(16):5319–34.

120. Dreosti E, Esposti F, Baden T, Lagnado L. In vivo evidence that retinal bipolar cells generate spikes modulated by light. Nat. Neurosci. 2011;14(8):951–2.

121. Baden T, Esposti F, Nikolaev A, Lagnado L. Spikes in Retinal Bipolar Cells Phase-Lock to Visual Stimuli with Millisecond Precision. Curr. Biol. 2011;21(22):1859–69.

122. Kuhlman SJ, Tring E, Trachtenberg JT. Fast-spiking interneurons have an initial orientation bias that is lost with vision. Nat. Neurosci. 2011;14(9):1121–3.

123. Chalifoux JR, Carter AG. Glutamate Spillover Promotes the Generation of NMDA Spikes. J. Neurosci. 2011;31(45):16435–16446.

124. Tuthill JC, Chiappe ME, Reiser MB. Neural correlates of illusory motion perception in Drosophila. Proc. Natl. Acad. Sci. 2011;108(23):9685–90.

125. Miri A, Daie K, Burdine RD, Aksay E, Tank DW. Regression-based identification of behavior-encoding neurons during large-scale optical imaging of neural activity at cellular resolution. J. Neurophysiol. 2011;105(2):964–80.

126. Miri A, Daie K, Arrenberg AB, Baier H, Aksay E, Tank DW. Spatial gradients and multidimensional dynamics in a neural integrator circuit. Nat. Neurosci. 2011;14(9):1150–9.

127. Christie JM, Chiu DN, Jahr CE. Ca(2+)-dependent enhancement of release by subthreshold somatic depolarization. Nat. Neurosci. 2011;14(1):62–8.

128. Acker CD, Yan P, Loew LM. Single-voxel recording of voltage transients in dendritic spines. Biophys. J. 2011;101(2):L11–3.

129. Berndt A, Schoenenberger P, Mattis J, Tye KM, Deisseroth K, Hegemann P, Oertner TG. High-efficiency channelrhodopsins for fast neuronal stimulation at low light levels. Proc. Natl. Acad. Sci. 2011;108(18):7595–600.

130. Viaene AN, Petrof I, Sherman SM. Properties of the thalamic projection from the posterior medial nucleus to primary and secondary somatosensory cortices in the mouse. Proc. Natl. Acad. Sci. 2011;108(44):18156–61.

131. Viaene AN, Petrof I, Sherman SM. Synaptic Properties of Thalamic Input to the Subgranular Layers of Primary Somatosensory and Auditory Cortices in the Mouse. J. Neurosci. 2011;31(36):12738–12747.

132. De Pasquale R, Sherman SM. Synaptic Properties of Corticocortical Connections between the Primary and Secondary Visual Cortical Areas in the Mouse. J. Neurosci. 2011;31(46):16494–16506.

133. Viaene AN, Petrof I, Sherman SM. Synaptic properties of thalamic input to layers 2/3 and 4 of primary somatosensory and auditory cortices. J. Neurophysiol. 2011;105(1):279–92.

134. Ikrar T, Olivas ND, Shi Y, Xu X. Mapping inhibitory neuronal circuits by laser scanning photostimulation. J. Vis. Exp. 2011;(56).

135. Middleton JW, Kiritani T, Pedersen C, Turner JG, Shepherd GMG, Tzounopoulos T. Mice with behavioral evidence of tinnitus exhibit dorsal cochlear nucleus hyperactivity because of decreased GABAergic inhibition. Proc. Natl. Acad. Sci. 2011;108(18):7601–6.

136. Mao T, Kusefoglu D, Hooks BM, Huber D, Petreanu L, Svoboda K. Long-Range Neuronal Circuits Underlying the Interaction between Sensory and Motor Cortex. Neuron. 2011;72(1):111–123.

137. Hooks BM, Hires SA, Zhang Y-X, Huber D, Petreanu L, Svoboda K, Shepherd GMG. Laminar analysis of excitatory local circuits in vibrissal motor and sensory cortical areas. PLoS Biol. 2011;9(1):e1000572.

138. Lam Y-W, Sherman SM. Functional organization of the thalamic input to the thalamic reticular nucleus. J. Neurosci. 2011;31(18):6791–9.

139. Qiu S, Anderson CT, Levitt P, Shepherd GMG. Circuit-specific intracortical hyperconnectivity in mice with deletion of the autism-associated Met receptor tyrosine kinase. J. Neurosci. 2011;31(15):5855–64.

140. Rosselet C, Fieschi M, Hugues S, Bureau I. Associative learning changes the organization of functional excitatory circuits targeting the supragranular layers of mouse barrel cortex. Front. Neural Circuits. 2011;4:126.

141. Sheets PL, Suter BA, Kiritani T, Chan CS, Surmeier DJ, Shepherd GMG. Corticospinal-specific HCN expression in mouse motor cortex: I(h)-dependent synaptic integration as a candidate microcircuit mechanism involved in motor control. J. Neurophysiol. 2011;106(5):2216–31.

142. Lien AD, Scanziani M. In vivo Labeling of Constellations of Functionally Identified Neurons for Targeted in vitro Recordings. Front. Neural Circuits. 2011;5:16.

143. Marshel JH, Garrett ME, Nauhaus I, Callaway EM. Functional Specialization of Seven Mouse Visual Cortical Areas. Neuron. 2011;72(6):1040–1054.

144. Blumhagen F, Zhu P, Shum J, Schärer Y-PZ, Yaksi E, Deisseroth K, Friedrich RW. Neuronal filtering of multiplexed odour representations. Nature. 2011;479(7374):493–498.

145. Pugh JR, Jahr CE. NMDA Receptor Agonists Fail To Alter Release from Cerebellar Basket Cells. J. Neurosci. 2011;31(46):16550–16555.

146. Woods GF, Oh WC, Boudewyn LC, Mikula SK, Zito K. Loss of PSD-95 Enrichment Is Not a Prerequisite for Spine Retraction. J. Neurosci. 2011;31(34):12129–12138.

147. Kitamura K, Hausser M. Dendritic Calcium Signaling Triggered by Spontaneous and Sensory-Evoked Climbing Fiber Input to Cerebellar Purkinje Cells In Vivo. J. Neurosci. 2011;31(30):10847–10858.

148. Andermann ML, Kerlin AM, Roumis DK, Glickfeld LL, Reid RC. Functional Specialization of Mouse Higher Visual Cortical Areas. Neuron. 2011;72(6):1025–1039.

149. Peñagarikano O, Abrahams BS, Herman EI, Winden KD, Gdalyahu A, Dong H, Sonnenblick LI, Gruver R, Almajano J, Bragin A, Golshani P, Trachtenberg JT, Peles E, Geschwind DH. Absence of CNTNAP2 Leads to Epilepsy, Neuronal Migration Abnormalities, and Core Autism-Related Deficits. Cell. 2011;147(1):235–246.

150. Bégin S, Burgoyne B, Mercier V, Villeneuve A, Vallée R, Côté D. Coherent anti-Stokes Raman scattering hyperspectral tissue imaging with a wavelength-swept system. Biomed. Opt. Express. 2011;2(5):1296–306.

151. Liu CC, Gao SS, Yuan T, Steele C, Puria S, Oghalai JS. Biophysical mechanisms underlying outer hair cell loss associated with a shortened tectorial membrane. J. Assoc. Res. Otolaryngol. 2011;12(5):577–94.

152. Borghuis BG, Tian L, Xu Y, Nikonov SS, Vardi N, Zemelman B V, Looger LL. Imaging light responses of targeted neuron populations in the rodent retina. J. Neurosci. 2011;31(8):2855–67.

153. Pugh JR, Jahr CE. Axonal GABAA receptors increase cerebellar granule cell excitability and synaptic activity. J. Neurosci. 2011;31(2):565–74.

154. Ramsey AJ, Milenkovic M, Oliveira AF, Escobedo-Lozoya Y, Seshadri S, Salahpour A, Sawa A, Yasuda R, Caron MGMG. Impaired NMDA receptor transmission alters striatal synapses and DISC1 protein in an age-dependent manner. Proc. Natl. Acad. Sci. 2011;108(14):5795.

155. Mostany R, Portera-Cailliau C. Absence of large-scale dendritic plasticity of layer 5 pyramidal neurons in peri-infarct cortex. J. Neurosci. 2011;31(5):1734–8.

156. Xia A, Gao SS, Yuan T, Osborn A, Bress A, Pfister M, Maricich SM, Pereira FA, Oghalai JS. Deficient forward transduction and enhanced reverse transduction in the alpha tectorin C1509G human hearing loss mutation. Dis. Model. Mech. 2010;3(3-4):209–23.

157. Ko ACT, Ridsdale A, Smith MSD, Mostaço-Guidolin LB, Hewko MD, Pegoraro AF, Kohlenberg EK, Schattka B, Shiomi M, Stolow A, Sowa MG. Multimodal nonlinear optical imaging of atherosclerotic plaque development in myocardial infarction-prone rabbits. J. Biomed. Opt. 2010;15(2):020501.

158. Yuan T, Gao SS, Saggau P, Oghalai JS. Calcium imaging of inner ear hair cells within the cochlear epithelium of mice using two-photon microscopy. J. Biomed. Opt. 2010;15(1):016002.

159. Cruz-Martín A, Crespo M, Portera-Cailliau C. Delayed stabilization of dendritic spines in fragile X mice. J. Neurosci. 2010;30(23):7793–803.

160. Wilbrecht L, Holtmaat A, Wright N, Fox K, Svoboda K. Structural plasticity underlies experience-dependent functional plasticity of cortical circuits. J. Neurosci. 2010;30(14):4927–32.

161. Seelig JD, Chiappe ME, Lott GK, Dutta A, Osborne JE, Reiser MB, Jayaraman V. Two-photon calcium imaging from head-fixed Drosophila during optomotor walking behavior. Nat. Methods. 2010;7(7):535–40.

162. Patterson MA, Szatmari EM, Yasuda R. AMPA receptors are exocytosed in stimulated spines and adjacent dendrites in a Ras-ERK-dependent manner during long-term potentiation. Proc. Natl. Acad. Sci. 2010;107(36):15951–6.

163. Chalifoux JR, Carter AG. GABAB receptors modulate NMDA receptor calcium signals in dendritic spines. Neuron. 2010;66(1):101–13.

164. Mostany R, Chowdhury TG, Johnston DG, Portonovo SA, Carmichael ST, Portera-Cailliau C. Local hemodynamics dictate long-term dendritic plasticity in peri-infarct cortex. J. Neurosci. 2010;30(42):14116–26.

165. Ma W-P, Liu B-H, Li Y-T, Huang ZJ, Zhang LI, Tao HW. Visual representations by cortical somatostatin inhibitory neurons--selective but with weak and delayed responses. J. Neurosci. 2010;30(43):14371–9.

166. Theyel BB, Llano DA, Sherman SM. The corticothalamocortical circuit drives higher-order cortex in the mouse. Nat. Neurosci. 2010;13(1):84–8.

167. Ch’ng YH, Reid RC. Cellular imaging of visual cortex reveals the spatial and functional organization of spontaneous activity. Front. Integr. Neurosci. 2010;4.

168. Komiyama T, Sato TR, O’Connor DH, Zhang Y-X, Huber D, Hooks BM, Gabitto M, Svoboda K. Learning-related fine-scale specificity imaged in motor cortex circuits of behaving mice. Nature. 2010;464(7292):1182–6.

169. Smith SL, Häusser M. Parallel processing of visual space by neighboring neurons in mouse visual cortex. Nat. Neurosci. 2010;13(9):1144–9.

170. Chiappe ME, Seelig JD, Reiser MB, Jayaraman V. Walking modulates speed sensitivity in Drosophila motion vision. Curr. Biol. 2010;20(16):1470–5.

171. Guetg N, Abdel Aziz S, Holbro N, Turecek R, Rose T, Seddik R, Gassmann M, Moes S, Jenoe P, Oertner TG, Casanova E, Bettler B. NMDA receptor-dependent GABAB receptor internalization via CaMKII phosphorylation of serine 867 in GABAB1. Proc. Natl. Acad. Sci. 2010;107(31):13924–9.

172. O’Connor DH, Clack NG, Huber D, Komiyama T, Myers EW, Svoboda K. Vibrissa-based object localization in head-fixed mice. J. Neurosci. 2010;30(5):1947–67.

173. Oviedo H V, Bureau I, Svoboda K, Zador AM. The functional asymmetry of auditory cortex is reflected in the organization of local cortical circuits. Nat. Neurosci. 2010;13(11):1413–20.

174. Anderson CT, Sheets PL, Kiritani T, Shepherd GMG. Sublayer-specific microcircuits of corticospinal and corticostriatal neurons in motor cortex. Nat. Neurosci. 2010;13(6):739–44.

175. Wood L, Shepherd GMG. Synaptic circuit abnormalities of motor-frontal layer 2/3 pyramidal neurons in a mutant mouse model of Rett syndrome. Neurobiol. Dis. 2010;38(2):281–7.

176. Shi Y, Nenadic Z, Xu X. Novel use of matched filtering for synaptic event detection and extraction. PLoS One. 2010;5(11):e15517.

177. Xu X, Olivas ND, Levi R, Ikrar T, Nenadic Z. High precision and fast functional mapping of cortical circuitry through a novel combination of voltage sensitive dye imaging and laser scanning photostimulation. J. Neurophysiol. 2010;103(4):2301–12.

178. Lam Y-W, Sherman SM. Functional organization of the somatosensory cortical layer 6 feedback to the thalamus. Cereb. cortex. 2010;20(1):13–24.

179. Christie LA, Russell TA, Xu J, Wood L, Shepherd GMG, Contractor A. AMPA receptor desensitization mutation results in severe developmental phenotypes and early postnatal lethality. Proc. Natl. Acad. Sci. 2010;107(20):9412–7.

180. Kerlin AM, Andermann ML, Berezovskii VK, Reid RC. Broadly tuned response properties of diverse inhibitory neuron subtypes in mouse visual cortex. Neuron. 2010;67(5):858–71.

181. Wiechert MT, Judkewitz B, Riecke H, Friedrich RW. Mechanisms of pattern decorrelation by recurrent neuronal circuits. Nat. Neurosci. 2010;13(8):1003–10.

182. Holbro N, Grunditz A, Wiegert JS, Oertner TG. AMPA receptors gate spine Ca(2+) transients and spike-timing-dependent potentiation. Proc. Natl. Acad. Sci. 2010;107(36):15975–80.

183. Heider B, Nathanson JL, Isacoff EY, Callaway EM, Siegel RM. Two-Photon Imaging of Calcium in Virally Transfected Striate Cortical Neurons of Behaving Monkey. PLoS One. 2010;5(11):e13829.

184. Parra SG, Chia TH, Zinter JP, Levene MJ. Multiphoton microscopy of cleared mouse organs. J. Biomed. Opt. 2010;15(3):036017.

185. Mostaço-Guidolin LB, Sowa MG, Ridsdale A, Pegoraro AF, Smith MSD, Hewko MD, Kohlenberg EK, Schattka B, Shiomi M, Stolow A, Ko AC-T. Differentiating atherosclerotic plaque burden in arterial tissues using femtosecond CARS-based multimodal nonlinear optical imaging. Biomed. Opt. Express. 2010;1(1):59–73.

186. Martin SM, O’Brien GS, Portera-Cailliau C, Sagasti A. Wallerian degeneration of zebrafish trigeminal axons in the skin is required for regeneration and developmental pruning. Development. 2010;137(23):3985–94.

187. Chowdhury TG, Jimenez JC, Bomar JM, Cruz-Martin A, Cantle JP, Portera-Cailliau C. Fate of cajal-retzius neurons in the postnatal mouse neocortex. Front. Neuroanat. 2010;4:10.

188. Sato TR, Svoboda K. The functional properties of barrel cortex neurons projecting to the primary motor cortex. J. Neurosci. 2010;30(12):4256–60.

189. O’Connor DH, Peron SP, Huber D, Svoboda K. Neural activity in barrel cortex underlying vibrissa-based object localization in mice. Neuron. 2010;67(6):1048–61.

190. Niessing J, Friedrich RW. Olfactory pattern classification by discrete neuronal network states. Nature. 2010;465(7294):47–52.

191. Dombeck DA, Harvey CD, Tian L, Looger LL, Tank DW. Functional imaging of hippocampal place cells at cellular resolution during virtual navigation. Nat. Neurosci. 2010;13(11):1433–40.

192. Higley MJ, Sabatini BL. Competitive regulation of synaptic Ca2+ influx by D2 dopamine and A2A adenosine receptors. Nat. Neurosci. 2010;13(8):958–66.

193. Heneka MTM, Nadrigny F, Regen T, Martinez-Hernandez A, Dumitrescu-Ozimek L, Terwel D, Jardanhazi-Kurutz D, Walter J, Kirchhoff F, Hanisch U-K, Kummer MP. Locus ceruleus controls Alzheimer’s disease pathology by modulating microglial functions through norepinephrine. Proc. Natl. Acad. Sci. 2010;107(13):6058–63.

194. Andermann ML, Kerlin AM, Reid R. Chronic cellular imaging of mouse visual cortex during operant behavior and passive viewing. Front. Cell. Neurosci. 2010;4.

195. Dorostkar MMM, Dreosti E, Odermatt B, Lagnado L. Computational processing of optical measurements of neuronal and synaptic activity in networks. J. Neurosci. Methods. 2010;188(1):141–50.

196. Chia TH, Levene MJ. Microprisms for in vivo multilayer cortical imaging. J. Neurophysiol. 2009;102(2):1310–4.

197. Virk MS, Arttamangkul S, Birdsong WT, Williams JT. Buprenorphine is a weak partial agonist that inhibits opioid receptor desensitization. J. Neurosci. 2009;29(22):7341–8.

198. Schultz SR, Kitamura K, Post-Uiterweer A, Krupic J, Häusser M. Spatial pattern coding of sensory information by climbing fiber-evoked calcium signals in networks of neighboring cerebellar Purkinje cells. J. Neurosci. 2009;29(25):8005–15.

199. Simons SB, Escobedo Y, Yasuda R, Dudek SM. Regional differences in hippocampal calcium handling provide a cellular mechanism for limiting plasticity. Proc. Natl. Acad. Sci. 2009;106(33):14080–4.

200. Liu B, Li P, Li Y, Sun YJ, Yanagawa Y, Obata K, Zhang LI, Tao HW. Visual receptive field structure of cortical inhibitory neurons revealed by two-photon imaging guided recording. J. Neurosci. 2009;29(34):10520–32.

201. Chow DK, Groszer M, Pribadi M, Machniki M, Carmichael ST, Liu X, Trachtenberg JT. Laminar and compartmental regulation of dendritic growth in mature cortex. Nat. Neurosci. 2009;12(2):116–8.

202. Holtmaat A, Bonhoeffer T, Chow DK, Chuckowree J, De Paola V, Hofer SB, Hübener M, Keck T, Knott G, Lee W-CA, Mostany R, Mrsic-Flogel TD, Nedivi E, Portera-Cailliau C, Svoboda K, Trachtenberg JT, Wilbrecht L. Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window. Nat. Protoc. 2009;4(8):1128–44.

203. Knott GW, Holtmaat A, Trachtenberg JT, Svoboda K, Welker E. A protocol for preparing GFP-labeled neurons previously imaged in vivo and in slice preparations for light and electron microscopic analysis. Nat. Protoc. 2009;4(8):1145–56.

204. Matter C, Pribadi M, Liu X, Trachtenberg JT. Delta-catenin is required for the maintenance of neural structure and function in mature cortex in vivo. Neuron. 2009;64(3):320–7.

205. Lewis TL, Mao T, Svoboda K, Arnold DB. Myosin-dependent targeting of transmembrane proteins to neuronal dendrites. Nat. Neurosci. 2009;12(5):568–76.

206. Dombeck DA, Graziano MS, Tank DW. Functional clustering of neurons in motor cortex determined by cellular resolution imaging in awake behaving mice. J. Neurosci. 2009;29(44):13751–60.

207. Ozden I, Sullivan MR, Lee HM, Wang SS-H. Reliable coding emerges from coactivation of climbing fibers in microbands of cerebellar Purkinje neurons. J. Neurosci. 2009;29(34):10463–73.

208. Watt AJ, Cuntz H, Mori M, Nusser Z, Sjöström PJ, Häusser M. Traveling waves in developing cerebellar cortex mediated by asymmetrical Purkinje cell connectivity. Nat. Neurosci. 2009;12(4):463–73.

209. Dreosti E, Odermatt B, Dorostkar MM, Lagnado L. A genetically encoded reporter of synaptic activity in vivo. Nat. Methods. 2009;6(12):883–9.

210. O’Brien GS, Martin SM, Söllner C, Wright GJ, Becker CG, Portera-Cailliau C, Sagasti A. Developmentally regulated impediments to skin reinnervation by injured peripheral sensory axon terminals. Curr. Biol. 2009;19(24):2086–90.

211. Petreanu L, Mao T, Sternson SM, Svoboda K. The subcellular organization of neocortical excitatory connections. Nature. 2009;457(7233):1142–5.

212. Petrof I, Sherman SM. Synaptic properties of the mammillary and cortical afferents to the anterodorsal thalamic nucleus in the mouse. J. Neurosci. 2009;29(24):7815–9.

213. Wood L, Gray NW, Zhou Z, Greenberg ME, Shepherd GMG. Synaptic circuit abnormalities of motor-frontal layer 2/3 pyramidal neurons in an RNA interference model of methyl-CpG-binding protein 2 deficiency. J. Neurosci. 2009;29(40):12440–8.

214. Tian L, Hires SA, Mao T, Huber D, Chiappe ME, Chalasani SH, Petreanu L, Akerboom J, McKinney SA, Schreiter ER, Bargmann CI, Jayaraman V, Svoboda K, Looger LL. Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators. Nat. Methods. 2009;6(12):875–81.

215. Lee CC, Sherman SM. Glutamatergic inhibition in sensory neocortex. Cereb. cortex. 2009;19(10):2281–9.

216. Zhao C, Kao JPY, Kanold PO. Functional excitatory microcircuits in neonatal cortex connect thalamus and layer 4. J. Neurosci. 2009;29(49):15479–88.

217. Llano DA, Sherman SM. Differences in intrinsic properties and local network connectivity of identified layer 5 and layer 6 adult mouse auditory corticothalamic neurons support a dual corticothalamic projection hypothesis. Cereb. cortex. 2009;19(12):2810–26.

218. Chia TH, Levene MJ. In vivo imaging of deep cortical layers using a microprism. J. Vis. Exp. 2009;(30).

219. Judkewitz B, Rizzi M, Kitamura K, Häusser M. Targeted single-cell electroporation of mammalian neurons in vivo. Nat. Protoc. 2009;4(6):862–9.

220. Yu YJ, Arttamangkul S, Evans CJ, Williams JT, von Zastrow M. Neurokinin 1 receptors regulate morphine-induced endocytosis and desensitization of mu-opioid receptors in CNS neurons. J. Neurosci. 2009;29(1):222–33.

221. Schoenenberger P, Gerosa D, Oertner TG. Temporal control of immediate early gene induction by light. PLoS One. 2009;4(12):e8185.

222. O’Brien G, Rieger S. Two-photon axotomy and time-lapse confocal imaging in live zebrafish embryos. J. Vis. Exp. 2009.

223. Ding JB, Takasaki KT, Sabatini BL. Supraresolution imaging in brain slices using stimulated-emission depletion two-photon laser scanning microscopy. Neuron. 2009;63(4):429–437.

224. Zhong H, Sia GM, Sato TR, Gray NW, Mao T, Khuchua Z, Huganir RL, Svoboda K. Subcellular dynamics of type II PKA in neurons. Neuron. 2009;62(3):363–374.

225. Christie JM, Jahr CE. Selective expression of ligand-gated ion channels in L5 pyramidal cell axons. J. Neurosci. 2009;29(37):11441.

226. Zito K, Scheuss V, Knott G, Hill T, Svoboda K. Rapid functional maturation of nascent dendritic spines. Neuron. 2009;61(2):247–258.

227. Hoogland TM, Kuhn B, Göbel W, Huang W, Nakai J, Helmchen F, Flint J, Wang SSH. Radially expanding transglial calcium waves in the intact cerebellum. Proc. Natl. Acad. Sci. 2009;106(9):3496.

228. Golshani P, Gonçalves JT, Khoshkhoo S, Mostany R, Smirnakis S, Portera-Cailliau C. Internally mediated developmental desynchronization of neocortical network activity. J. Neurosci. 2009;29(35):10890.

229. Holbro N, Grunditz Å, Oertner TG. Differential distribution of endoplasmic reticulum controls metabotropic signaling and plasticity at hippocampal synapses. Proc. Natl. Acad. Sci. 2009;106(35):15055.

230. Higley MJM, Soler-Llavina GJ, Sabatini BL. Cholinergic modulation of multivesicular release regulates striatal synaptic potency and integration. Nat. Neurosci. 2009;12(9):1121–8.

231. Schoenenberger P, Grunditz A, Rose T, Oertner TG. Optimizing the spatial resolution of Channelrhodopsin-2 activation. Brain Cell Biol. 2008;36(1-4):119–27.

232. Major G, Polsky A, Denk W, Schiller J, Tank DW. Spatiotemporally graded NMDA spike/plateau potentials in basal dendrites of neocortical pyramidal neurons. J. Neurophysiol. 2008;99(5):2584–601.

233. Bigelow AW, Geard CR, Randers-Pehrson G, Brenner DJ. Microbeam-integrated multiphoton imaging system. Rev. Sci. Instrum. 2008;79(12):123707.

234. Cruz-Martín A, Schweizer FE. Imbalance between excitation and inhibition among synaptic connections of CA3 pyramidal neurons in cultured hippocampal slices. Eur. J. Neurosci. 2008;27(6):1353–63.

235. Gregor T, McGregor AP, Wieschaus EF. Shape and function of the Bicoid morphogen gradient in dipteran species with different sized embryos. Dev. Biol. 2008;316(2):350–8.

236. Ozden I, Lee HM, Sullivan MR, Wang SS-H. Identification and clustering of event patterns from in vivo multiphoton optical recordings of neuronal ensembles. J. Neurophysiol. 2008;100(1):495–503.

237. Kitamura K, Judkewitz B, Kano M, Denk W, Häusser M. Targeted patch-clamp recordings and single-cell electroporation of unlabeled neurons in vivo. Nat. Methods. 2008;5(1):61–7.

238. Harvey CD, Yasuda R, Zhong H, Svoboda K. The spread of Ras activity triggered by activation of a single dendritic spine. Science (80-. ). 2008;321(5885):136–40.

239. Mostany R, Portera-Cailliau C. A method for 2-photon imaging of blood flow in the neocortex through a cranial window. J. Vis. Exp. 2008;(12).

240. Zhang Y-P, Holbro N, Oertner TG. Optical induction of plasticity at single synapses reveals input-specific accumulation of alphaCaMKII. Proc. Natl. Acad. Sci. 2008;105(33):12039–44.

241. Weiler N, Wood L, Yu J, Solla SA, Shepherd GMG. Top-down laminar organization of the excitatory network in motor cortex. Nat. Neurosci. 2008;11(3):360–6.

242. Lee CC, Sherman SM. Synaptic properties of thalamic and intracortical inputs to layer 4 of the first- and higher-order cortical areas in the auditory and somatosensory systems. J. Neurophysiol. 2008;100(1):317–26.

243. Yu J, Anderson CT, Kiritani T, Sheets PL, Wokosin DL, Wood L, Shepherd GMG. Local-Circuit Phenotypes of Layer 5 Neurons in Motor-Frontal Cortex of YFP-H Mice. Front. Neural Circuits. 2008;2:6.

244. Bureau I, Shepherd GMG, Svoboda K. Circuit and plasticity defects in the developing somatosensory cortex of FMR1 knock-out mice. J. Neurosci. 2008;28(20):5178–88.

245. Atasoy D, Aponte Y, Su HH, Sternson SM. A FLEX switch targets Channelrhodopsin-2 to multiple cell types for imaging and long-range circuit mapping. J. Neurosci. 2008;28(28):7025–30.

246. Golshani P, Portera-Cailliau C. In vivo 2-photon calcium imaging in layer 2/3 of mice. J. Vis. Exp. 2008;(13).

247. Grunditz Å, Holbro N, Tian L, Zuo Y, Oertner TG. Spine neck plasticity controls postsynaptic calcium signals through electrical compartmentalization. J. Neurosci. 2008;28(50):13457.

248. Kuhlman SJ, Huang ZJ. High-resolution labeling and functional manipulation of specific neuron types in mouse brain by Cre-activated viral gene expression. PLoS One. 2008;3(4):e2005.

249. Arttamangkul S, Quillinan N, Low MJ, von Zastrow M, Pintar J, Williams JT. Differential activation and trafficking of $\mu$-opioid receptors in brain slices. Mol. Pharmacol. 2008;74(4):972.

250. Christie JM, Jahr CE. Dendritic NMDA receptors activate axonal calcium channels. Neuron. 2008;60(2):298–307.

251. Riegel AC, Williams JT. CRF facilitates calcium release from intracellular stores in midbrain dopamine neurons. Neuron. 2008;57(4):559–570.

252. Gandhi SP, Yanagawa Y, Stryker MP. Delayed plasticity of inhibitory neurons in developing visual cortex. Proc. Natl. Acad. Sci. 2008;105(43):16797.

253. Mao T, O’Connor DH, Scheuss V, Nakai J, Svoboda K. Characterization and subcellular targeting of GCaMP-type genetically-encoded calcium indicators. PLoS One. 2008;3(3):e1796.

254. Harvey CD, Ehrhardt AG, Cellurale C, Zhong H, Yasuda R, Davis RJ, Svoboda K. A genetically encoded fluorescent sensor of ERK activity. Proc. Natl. Acad. Sci. 2008;105(49):19264.

255. Gregor T, Wieschaus EF, McGregor AP, Bialek W, Tank DW. Stability and nuclear dynamics of the bicoid morphogen gradient. Cell. 2007;130(1):141–52.

256. Sjöström PJ, Turrigiano GG, Nelson SB. Multiple forms of long-term plasticity at unitary neocortical layer 5 synapses. Neuropharmacology. 2007;52(1):176–84.

257. Zhang Y-P, Oertner TG. Optical induction of synaptic plasticity using a light-sensitive channel. Nat. Methods. 2007;4(2):139–41.

258. Lam Y-W, Sherman SM. Different topography of the reticulothalmic inputs to first- and higher-order somatosensory thalamic relays revealed using photostimulation. J. Neurophysiol. 2007;98(5):2903–9.

259. Petreanu L, Huber D, Sobczyk A, Svoboda K. Channelrhodopsin-2-assisted circuit mapping of long-range callosal projections. Nat. Neurosci. 2007;10(5):663–8.

260. Carter AG, Soler-Llavina GJ, Sabatini BL. Timing and location of synaptic inputs determine modes of subthreshold integration in striatal medium spiny neurons. J. Neurosci. 2007;27(33):8967.

261. Sato TR, Gray NW, Mainen ZF, Svoboda K. The functional microarchitecture of the mouse barrel cortex. PLoS Biol. 2007;5(7):e189.

262. Huber D, Petreanu L, Ghitani N, Ranade S, Hromádka T, Mainen Z, Svoboda K. Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving mice. Nature. 2007;451(7174):61–64.

263. Gregor T, Tank DW, Wieschaus EF, Bialek W. Probing the limits to positional information. Cell. 2007;130(1):153–164.

264. Harvey CD, Svoboda K. Locally dynamic synaptic learning rules in pyramidal neuron dendrites. Nature. 2007;450(7173):1195–1200.

265. Dombeck DA, Khabbaz AN, Collman F, Adelman TL, Tank DW. Imaging large-scale neural activity with cellular resolution in awake, mobile mice. Neuron. 2007;56(1):43–57.

266. Sobczyk A, Svoboda K. Activity-dependent plasticity of the NMDA-receptor fractional Ca2+ current. Neuron. 2007;53(1):17–24.

267. Birbach A, Verkuyl JM, Matus A. Reversible, activity-dependent targeting of profilin to neuronal nuclei. Exp. Cell Res. 2006;312(12):2279–87.

268. Knott GW, Holtmaat A, Wilbrecht L, Welker E, Svoboda K. Spine growth precedes synapse formation in the adult neocortex in vivo. Nat. Neurosci. 2006;9(9):1117–24.

269. Lam Y-W, Nelson CS, Sherman SM. Mapping of the functional interconnections between thalamic reticular neurons using photostimulation. J. Neurophysiol. 2006;96(5):2593–600.

270. Bureau I, von Saint Paul F, Svoboda K. Interdigitated paralemniscal and lemniscal pathways in the mouse barrel cortex. PLoS Biol. 2006;4(12):e382.

271. Soler-Llavina GJ, Sabatini BL. Synapse-specific plasticity and compartmentalized signaling in cerebellar stellate cells. Nat. Neurosci. 2006;9(6):798–806.

272. Sjöström PJ, Häusser M. A cooperative switch determines the sign of synaptic plasticity in distal dendrites of neocortical pyramidal neurons. Neuron. 2006;51(2):227–38.

273. Holtmaat A, Wilbrecht L, Knott GW, Welker E, Svoboda K. Experience-dependent and cell-type-specific spine growth in the neocortex. Nature. 2006;441(7096):979–83.

274. Yasuda R, Harvey CD, Zhong H, Sobczyk A, Van Aelst L, Svoboda K. Supersensitive Ras activation in dendrites and spines revealed by two-photon fluorescence lifetime imaging. Nat. Neurosci. 2006;9(2):283–291.

275. Arttamangkul S, Torrecilla M, Kobayashi K, Okano H, Williams JT. Separation of $\mu$-Opioid Receptor Desensitization and Internalization: Endogenous Receptors in Primary Neuronal Cultures. J. Neurosci. 2006;26(15):4118.

276. Gray NW, Weimer RM, Bureau I, Svoboda K. Rapid redistribution of synaptic PSD-95 in the neocortex in vivo. PLoS Biol. 2006;4(11):e370.

277. Scheuss V, Yasuda R, Sobczyk A, Svoboda K. Nonlinear [Ca2+] signaling in dendrites and spines caused by activity-dependent depression of Ca2+ extrusion. J. Neurosci. 2006;26(31):8183.

278. Vigot R, Barbieri S, Bräuner-Osborne H, Turecek R, Shigemoto R, Zhang YP, Luján R, Jacobson LH, Biermann B, Fritschy JM, others. Differential compartmentalization and distinct functions of GABAB receptor variants. Neuron. 2006;50(4):589–601.

279. De Paola V, Holtmaat A, Knott G, Song S, Wilbrecht L, Caroni P, Svoboda K. Cell type-specific structural plasticity of axonal branches and boutons in the adult neocortex. Neuron. 2006;49(6):861–875.

280. Papageorgas P, Maroulis D, Anagnostopoulos G, Albrecht H, Wagner B, Iakovidis DK, Theofanous NG. A high-performance imaging and control system for a micromirror-based laser-scanning endoscope device. IEEE Trans. Instrum. Meas. 2006;55(5):1725 – 1733.

281. Gregor T, Bialek W, de Ruyter van Steveninck RR, Tank DW, Wieschaus EF. Diffusion and scaling during early embryonic pattern formation. Proc. Natl. Acad. Sci. 2005;102(51):18403–7.

282. Song S, Sjöström PJ, Reigl M, Nelson S, Chklovskii DB. Highly nonrandom features of synaptic connectivity in local cortical circuits. PLoS Biol. 2005;3(3):e68.

283. Sternson SM, Shepherd GMG, Friedman JM. Topographic mapping of VMH --> arcuate nucleus microcircuits and their reorganization by fasting. Nat. Neurosci. 2005;8(10):1356–63.

284. Shepherd GMG, Svoboda K. Laminar and columnar organization of ascending excitatory projections to layer 2/3 pyramidal neurons in rat barrel cortex. J. Neurosci. 2005;25(24):5670–9.

285. Shepherd GMG, Stepanyants A, Bureau I, Chklovskii D, Svoboda K. Geometric and functional organization of cortical circuits. Nat. Neurosci. 2005;8(6):782–90.

286. Ngo-Anh TJ, Bloodgood BL, Lin M, Sabatini BL, Maylie J, Adelman JP. SK channels and NMDA receptors form a Ca2+-mediated feedback loop in dendritic spines. Nat. Neurosci. 2005;8(5):642–9.

287. Holtmaat AJGD, Trachtenberg JT, Wilbrecht L, Shepherd GM, Zhang X, Knott GW, Svoboda K. Transient and persistent dendritic spines in the neocortex in vivo. Neuron. 2005;45(2):279–91.

288. Ohki K, Chung S, Ch’ng YH, Kara P, Reid RC. Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex. Nature. 2005;433(7026):597–603.

289. Sobczyk A, Scheuss V, Svoboda K. NMDA receptor subunit-dependent [Ca2+] signaling in individual hippocampal dendritic spines. J. Neurosci. 2005;25(26):6037.

290. Portera-Cailliau C, Weimer RM, De Paola V, Caroni P, Svoboda K. Diverse modes of axon elaboration in the developing neocortex. PLoS Biol. 2005;3(8):e272.

291. Egger V, Svoboda K, Mainen ZF. Dendrodendritic synaptic signals in olfactory bulb granule cells: local spine boost and global low-threshold spike. J. Neurosci. 2005;25(14):3521.

292. Carter AG, Sabatini BL. State-dependent calcium signaling in dendritic spines of striatal medium spiny neurons. Neuron. 2004;44(3):483–93.

293. Bureau I, Shepherd GMG, Svoboda K. Precise development of functional and anatomical columns in the neocortex. Neuron. 2004;42(5):789–801.

294. Zito K, Knott G, Shepherd GMG, Shenolikar S, Svoboda K. Induction of spine growth and synapse formation by regulation of the spine actin cytoskeleton. Neuron. 2004;44(2):321–34.

295. Nimchinsky EA, Yasuda R, Oertner TG, Svoboda K. The number of glutamate receptors opened by synaptic stimulation in single hippocampal spines. J. Neurosci. 2004;24(8):2054.

296. Wang Y, Guo HF, Pologruto TA, Hannan F, Hakker I, Svoboda K, Zhong Y. Stereotyped odor-evoked activity in the mushroom body of Drosophila revealed by green fluorescent protein-based Ca2+ imaging. J. Neurosci. 2004;24(29):6507.

297. Pologruto TA, Yasuda R, Svoboda K. Monitoring neural activity and [Ca2+] with genetically encoded Ca2+ indicators. J. Neurosci. 2004;24(43):9572.

298. Brünig I, Kaech S, Brinkhaus H, Oertner TG, Matus A. Influx of extracellular calcium regulates actin-dependent morphological plasticity in dendritic spines. Neuropharmacology. 2004;47(5):669–676.

299. Shepherd GMG, Pologruto TA, Svoboda K. Circuit analysis of experience-dependent plasticity in the developing rat barrel cortex. Neuron. 2003;38(2):277–89.

300. Egger V, Svoboda K, Mainen ZF. Mechanisms of Lateral Inhibition in the Olfactory Bulb: Efficiency and Modulation of Spike-Evoked Calcium Influx into Granule Cells. J. Neurosci. 2003;23(20):7551–7558.

301. Trachtenberg JT, Chen BE, Knott GW, Feng G, Sanes JR, Welker E, Svoboda K. Long-term in vivo imaging of experience-dependent synaptic plasticity in adult cortex. Nature. 2002;420(6917):788–94.


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